Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   EGK58_RS01935 Genome accession   NZ_CP078027
Coordinates   438712..439239 (+) Length   175 a.a.
NCBI ID   WP_034169727.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain AV_175     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 433712..444239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGK58_RS01920 (EGK58_001920) - 436304..437361 (+) 1058 Protein_370 pilus assembly protein PilM -
  EGK58_RS01925 (EGK58_001925) comN 437361..437999 (+) 639 WP_005233586.1 PilN domain-containing protein Machinery gene
  EGK58_RS01930 (EGK58_001930) pilO 437996..438712 (+) 717 WP_034702183.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGK58_RS01935 (EGK58_001935) pilP 438712..439239 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  EGK58_RS01940 (EGK58_001940) pilQ 439301..441422 (+) 2122 Protein_374 type IV pilus secretin PilQ -
  EGK58_RS01945 (EGK58_001945) aroK 441459..441995 (+) 537 WP_005233593.1 shikimate kinase AroK -
  EGK58_RS01950 (EGK58_001950) aroB 442024..443103 (+) 1080 WP_034702179.1 3-dehydroquinate synthase -
  EGK58_RS01955 (EGK58_001955) - 443116..443967 (+) 852 WP_034702175.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19402.56 Da        Isoelectric Point: 7.1662

>NTDB_id=586407 EGK58_RS01935 WP_034169727.1 438712..439239(+) (pilP) [Acinetobacter variabilis strain AV_175]
MNIIKITSALTLGFLLVGCESRIDAVNQEMANIRNQPPLPIEPAPDFIPTEMFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLSMKGSMRNQAGQILALIQTPDGEIERIQRGSYMGLNHGRVTRITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=586407 EGK58_RS01935 WP_034169727.1 438712..439239(+) (pilP) [Acinetobacter variabilis strain AV_175]
ATGAATATCATTAAAATTACTTCAGCTTTAACGCTCGGATTTTTATTGGTGGGCTGCGAATCAAGAATTGATGCAGTCAA
TCAGGAAATGGCCAATATTCGCAATCAACCGCCATTACCGATTGAGCCGGCACCAGATTTTATTCCGACAGAAATGTTTA
ATTATGCAGCTCATCAGCTGAAAAGTCCTTTTCTGCCGAGTTCTTTAGCGGCTGAATTGAAAATTATGGCAGGTAAGCGA
GTTTATCCGAACTTGTCACGCCAATTACAGCCTTTAGAGAGTTATCCACTAGAGACCTTAAGCATGAAAGGCAGTATGCG
GAATCAGGCGGGGCAGATTCTGGCTCTAATTCAAACGCCTGATGGGGAAATTGAACGGATACAACGTGGCAGCTATATGG
GACTTAATCATGGTCGTGTAACGAGAATTACGCCGACACAGATTGACTTGATTGAGATTATTCCAGATGGCCGTGAGGGA
TATGTGGAACGACCACGAAGTCTGGTTTTGATTGGGCCAGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.714

100

0.777
  comL Acinetobacter baylyi ADP1

71.598

96.571

0.691