Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EGT69_RS15320 Genome accession   NZ_CP078018
Coordinates   3194390..3194974 (-) Length   194 a.a.
NCBI ID   WP_004909838.1    Uniprot ID   A0A8I0V5Q1
Organism   Acinetobacter junii strain AJ_351     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3189390..3199974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGT69_RS15305 (EGT69_015305) gabT 3189422..3190714 (-) 1293 WP_004909820.1 4-aminobutyrate--2-oxoglutarate transaminase -
  EGT69_RS15310 (EGT69_015310) - 3190869..3192368 (+) 1500 WP_004909822.1 PLP-dependent aminotransferase family protein -
  EGT69_RS15315 (EGT69_015315) - 3192441..3193883 (-) 1443 WP_004909824.1 amino acid permease -
  EGT69_RS15320 (EGT69_015320) ssb 3194390..3194974 (-) 585 WP_004909838.1 single-stranded DNA-binding protein Machinery gene
  EGT69_RS15325 (EGT69_015325) - 3195027..3196391 (-) 1365 WP_005403380.1 MFS transporter -
  EGT69_RS15330 (EGT69_015330) - 3196528..3197610 (-) 1083 WP_125298055.1 DUF475 domain-containing protein -
  EGT69_RS15335 (EGT69_015335) tenA 3197785..3198459 (+) 675 WP_004951380.1 thiaminase II -
  EGT69_RS15340 (EGT69_015340) - 3198614..3198967 (-) 354 WP_125298056.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21241.96 Da        Isoelectric Point: 6.7308

>NTDB_id=586394 EGT69_RS15320 WP_004909838.1 3194390..3194974(-) (ssb) [Acinetobacter junii strain AJ_351]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGGEHQAGNDFNQPRFNNNQGGGYQNTGYNNNQNGYGQGGGFGGGNQG
NYAGSPQAGNGFNTPKAAPQPAAAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=586394 EGT69_RS15320 WP_004909838.1 3194390..3194974(-) (ssb) [Acinetobacter junii strain AJ_351]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCTGAGACAAAAACCTTTCCAAATGGTGGATC
ACTGACCCAATTTTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGAAAAGAACAAACAGAATGGC
ATCGTATCGTATTGCATAACCGTCTAGGTGAAATTGCACAGCAATACTTACGTAAAGGTTCAAAAGTTTATATCGAAGGT
TCATTGCGTACGCGCCAATGGACAGACCAAAATGGTCAAGAGCGTTACAGCACCGAAATTCGTGGTGACCAAATGCAAAT
GCTCGATTCTCGTCAGCAAGGTGGTGAGCATCAAGCGGGTAATGATTTTAACCAACCGCGTTTTAACAACAATCAAGGCG
GTGGCTACCAAAACACAGGCTATAACAACAACCAAAATGGTTATGGTCAAGGTGGCGGTTTTGGTGGTGGAAATCAGGGC
AATTATGCAGGCAGTCCGCAAGCAGGTAATGGTTTTAATACACCAAAAGCCGCACCTCAACCTGCTGCGGCTCCAGCTGA
CTTAGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.246

100

0.526
  ssb Vibrio cholerae strain A1552

44.67

100

0.454
  ssb Neisseria gonorrhoeae MS11

39.583

98.969

0.392
  ssb Neisseria meningitidis MC58

39.583

98.969

0.392