Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   TL13_RS07355 Genome accession   NC_021213
Coordinates   1492288..1492932 (+) Length   214 a.a.
NCBI ID   WP_015647227.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1487288..1497932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS07340 (TL13_1473) - 1489345..1490682 (-) 1338 WP_004194632.1 hemolysin family protein -
  TL13_RS07345 (TL13_1474) - 1490815..1491594 (+) 780 WP_015647226.1 ABC transporter ATP-binding protein -
  TL13_RS07350 (TL13_1475) - 1491610..1492164 (-) 555 WP_004194627.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  TL13_RS07355 (TL13_1476) cclA/cilC 1492288..1492932 (+) 645 WP_015647227.1 prepilin peptidase Machinery gene
  TL13_RS07360 (TL13_1477) - 1493040..1494500 (+) 1461 WP_015647228.1 nicotinate phosphoribosyltransferase -
  TL13_RS07365 (TL13_1478) nadE 1494513..1495337 (+) 825 WP_015647229.1 ammonia-dependent NAD(+) synthetase -
  TL13_RS07370 (TL13_1479) trpB 1495379..1496554 (-) 1176 WP_015647230.1 tryptophan synthase subunit beta -
  TL13_RS07375 (TL13_1480) - 1497374..1497901 (-) 528 WP_015647231.1 VanZ family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24211.39 Da        Isoelectric Point: 8.4760

>NTDB_id=58638 TL13_RS07355 WP_015647227.1 1492288..1492932(+) (cclA/cilC) [Streptococcus suis TL13]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPASHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLIFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=58638 TL13_RS07355 WP_015647227.1 1492288..1492932(+) (cclA/cilC) [Streptococcus suis TL13]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCTATCGGCTCCTTCCTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCAGCTAGTCACTGCAATGCTTGCAAACGACGGCTCAAGGCTTGGGATCTAATTCCTATTCTTTCCC
AGCTTTCGACAAAATCCAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGATTGGAATTCTTAGCTGGT
CTAGTTGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCATCTTGGCAGGACTAGTTTTGACCAT
TTACGACATCAAGCATCAGGAATATCCTTTTGCTGTCTGGCTCATTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTCTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGATTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCGCCATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

50.472

99.065

0.5
  cclA/cilC Streptococcus pneumoniae Rx1

50

96.262

0.481
  cclA/cilC Streptococcus pneumoniae D39

50

96.262

0.481
  cclA/cilC Streptococcus pneumoniae R6

50

96.262

0.481
  cclA/cilC Streptococcus pneumoniae TIGR4

49.029

96.262

0.472
  cclA/cilC Streptococcus mitis NCTC 12261

46.698

99.065

0.463

Multiple sequence alignment