Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   TL13_RS03240 Genome accession   NC_021213
Coordinates   643908..644711 (+) Length   267 a.a.
NCBI ID   WP_002935843.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 638908..649711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS03215 (TL13_0634) - 639337..640035 (-) 699 WP_015646621.1 amino acid ABC transporter permease -
  TL13_RS03220 (TL13_0635) - 640050..640889 (-) 840 WP_015646622.1 transporter substrate-binding domain-containing protein -
  TL13_RS03225 (TL13_0636) - 640900..641661 (-) 762 WP_002935839.1 amino acid ABC transporter ATP-binding protein -
  TL13_RS03230 (TL13_0637) micA 641855..642559 (+) 705 WP_015646623.1 response regulator YycF Regulator
  TL13_RS03235 (TL13_0638) micB 642552..643901 (+) 1350 WP_002935841.1 cell wall metabolism sensor histidine kinase VicK Regulator
  TL13_RS03240 (TL13_0639) vicX 643908..644711 (+) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  TL13_RS03245 (TL13_0641) - 645446..646648 (-) 1203 WP_079266783.1 IS110 family transposase -
  TL13_RS03250 (TL13_0642) - 646927..647481 (+) 555 WP_015646626.1 ATP-binding cassette domain-containing protein -
  TL13_RS03255 (TL13_0643) - 647715..648449 (+) 735 WP_015646627.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29659.75 Da        Isoelectric Point: 5.7755

>NTDB_id=58625 TL13_RS03240 WP_002935843.1 643908..644711(+) (vicX) [Streptococcus suis TL13]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=58625 TL13_RS03240 WP_002935843.1 643908..644711(+) (vicX) [Streptococcus suis TL13]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTACCAGTCTTTTGGCGGAAATTGACCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTATGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGTGTCAGTCATGATGCGGCCTGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCCAACCATGATATTGAAATTTTGCGCTCGGGTTCTTACTCTTGGAACCTCAA
ACAACGGATTTTGTCAGATAAGGGCCACCTTTGTAACGAAGACGGTGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTGTCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCGCAGGCTGATTTAGGAGTTGGAGTGGATTTTCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772

Multiple sequence alignment