Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   KV238_RS00095 Genome accession   NZ_CP078012
Coordinates   15113..15835 (-) Length   240 a.a.
NCBI ID   WP_230923657.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_18-036     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 10113..20835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV238_RS00070 (KV238_00065) pstB 10278..11030 (-) 753 WP_043029925.1 phosphate ABC transporter ATP-binding protein PstB -
  KV238_RS00075 (KV238_00070) pstA 11032..11847 (-) 816 WP_230923655.1 phosphate ABC transporter permease PstA -
  KV238_RS00080 (KV238_00075) pstC 11840..12703 (-) 864 WP_012677663.1 phosphate ABC transporter permease subunit PstC -
  KV238_RS00085 (KV238_00080) - 12773..13645 (-) 873 WP_230923656.1 substrate-binding domain-containing protein -
  KV238_RS00090 (KV238_00085) pnpS 13804..15129 (-) 1326 WP_012677661.1 two-component system histidine kinase PnpS -
  KV238_RS00095 (KV238_00090) vicR 15113..15835 (-) 723 WP_230923657.1 response regulator transcription factor Regulator
  KV238_RS00100 (KV238_00095) - 16007..16162 (+) 156 WP_043029929.1 SPJ_0845 family protein -
  KV238_RS00105 (KV238_00100) - 16203..17105 (+) 903 WP_021320980.1 permease -
  KV238_RS00110 (KV238_00105) - 17105..17920 (+) 816 WP_165623620.1 TIGR03943 family putative permease subunit -
  KV238_RS00115 (KV238_00110) - 18105..19526 (-) 1422 WP_012515972.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28127.54 Da        Isoelectric Point: 6.1653

>NTDB_id=586220 KV238_RS00095 WP_230923657.1 15113..15835(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEVCKRLRSKGSKTPIMMV
SAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPL
TPKEYELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=586220 KV238_RS00095 WP_230923657.1 15113..15835(-) (vicR) [Streptococcus equi subsp. zooepidemicus strain SEZ_18-036]
ATGACAAAACGAGTATTATTAGTAGATGATGAGGAGCCTATCTTAAGGCTACTGGATTATCATTTGGCCAAGGAGGGCTT
TGTGACAGAGATGGTAACAGATGGCCGTACTGCCTTGGCATTAGCTGAAAGAGAACCTTATGATTTTATTGTGTTAGATA
TTATGCTGCCGCAATTAGACGGTATCGAGGTCTGCAAAAGGCTTCGTTCTAAGGGAAGTAAAACCCCAATTATGATGGTT
TCTGCTAAAAGTGATGAATTTGACAAGGTTTTGGCTTTGGAACTGGGGGCAGATGATTATGTGACCAAGCCCTTTAGTCC
TAGAGAATTATTAGCGCGTGTCAAGGCTATTTTAAGGCGCACTGAAGCAGAGATTTCTGGTGATGGTGAGGAGCGTCGTG
AGCCTTTTTATACGATGAGTCAATTGCGTCTGTACCCAGAGCGACATGAGGTCTATAAGGACAAGGAGCTATTGCCGTTA
ACCCCAAAGGAATATGAGCTACTGCTCTATCTCATGAAGCACCCTAATATGACCTTGACGCGTGAGCGGCTATTAGAGCG
TATCTGGGGTTATGACTTTGGCCAAGAAACACGTCTGGTAGACGTTCATATTGGCAAGCTCAGAGAAAAAATTGAGGACA
ATCCTAAGGCGCCTCAGTATATTCAAACCATTCGCGGCTATGGATACAAATTTAAGGAGCTAAAGAATGATAGGACATCT
TAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(158-231)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

52.155

96.667

0.504
  micA Streptococcus pneumoniae Cp1015

50

95.833

0.479
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.017

97.5

0.429
  covR Streptococcus salivarius strain HSISS4

40.773

97.083

0.396