Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   TL13_RS02315 Genome accession   NC_021213
Coordinates   460081..460746 (+) Length   221 a.a.
NCBI ID   WP_015646512.1    Uniprot ID   A0AB33UBF2
Organism   Streptococcus suis TL13     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 455081..465746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS02290 (TL13_0455) - 455292..456692 (+) 1401 WP_015646508.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  TL13_RS02295 (TL13_0456) - 456694..457065 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  TL13_RS02300 (TL13_0457) cysK 457091..458017 (-) 927 WP_015646509.1 cysteine synthase A -
  TL13_RS02305 (TL13_0458) - 458107..458739 (-) 633 WP_015646510.1 YigZ family protein -
  TL13_RS02310 (TL13_0459) comFA/cflA 458796..460088 (+) 1293 WP_015646511.1 DEAD/DEAH box helicase Machinery gene
  TL13_RS02315 (TL13_0460) comFC/cflB 460081..460746 (+) 666 WP_015646512.1 ComF family protein Machinery gene
  TL13_RS02320 (TL13_0461) hpf 460823..461365 (+) 543 WP_004194117.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25554.42 Da        Isoelectric Point: 8.5412

>NTDB_id=58619 TL13_RS02315 WP_015646512.1 460081..460746(+) (comFC/cflB) [Streptococcus suis TL13]
MSNCLLCGQAMKNKTRFSDLILFSKEKSGICEECFSTFEEIAEQHCPHCCKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLSATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDGKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=58619 TL13_RS02315 WP_015646512.1 460081..460746(+) (comFC/cflB) [Streptococcus suis TL13]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTATTTAGTAAAGAAAA
ATCGGGCATCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTGTAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTTCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAGTGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGGAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATTCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACGCGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

50

98.643

0.493
  comFC/cflB Streptococcus pneumoniae TIGR4

50

98.643

0.493
  comFC/cflB Streptococcus pneumoniae Rx1

50

98.643

0.493
  comFC/cflB Streptococcus pneumoniae D39

50

98.643

0.493
  comFC/cflB Streptococcus pneumoniae R6

50

98.643

0.493
  comFC/cflB Streptococcus mitis NCTC 12261

50

98.643

0.493

Multiple sequence alignment