Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M0D10_RS22220 Genome accession   NZ_CP096207
Coordinates   4754479..4754976 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa TBCF10839     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4749479..4759976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D10_RS22200 (M0D10_22145) pchD 4750263..4751906 (+) 1644 WP_023102834.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  M0D10_RS22205 (M0D10_22150) pchC 4751903..4752658 (+) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  M0D10_RS22210 (M0D10_22155) pchB 4752658..4752963 (+) 306 WP_010793476.1 isochorismate lyase PchB -
  M0D10_RS22215 (M0D10_22160) pchA 4752960..4754390 (+) 1431 WP_003118152.1 isochorismate synthase PchA -
  M0D10_RS22220 (M0D10_22165) ssb 4754479..4754976 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  M0D10_RS22225 (M0D10_22170) - 4754993..4756381 (-) 1389 WP_003103910.1 MFS transporter -
  M0D10_RS22230 (M0D10_22175) uvrA 4756595..4759432 (+) 2838 WP_003121863.1 excinuclease ABC subunit UvrA Machinery gene
  M0D10_RS22235 (M0D10_22180) bfr 4759504..4759968 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=586152 M0D10_RS22220 WP_003114685.1 4754479..4754976(-) (ssb) [Pseudomonas aeruginosa TBCF10839]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=586152 M0D10_RS22220 WP_003114685.1 4754479..4754976(-) (ssb) [Pseudomonas aeruginosa TBCF10839]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515