Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KPK64_RS05235 Genome accession   NZ_CP077963
Coordinates   1122129..1122638 (-) Length   169 a.a.
NCBI ID   WP_017827452.1    Uniprot ID   -
Organism   Proteus mirabilis strain 6Pmi283     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1117129..1127638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPK64_RS05210 (KPK64_01046) - 1119008..1120009 (-) 1002 WP_218211514.1 tyrosine-type recombinase/integrase -
  KPK64_RS05215 (KPK64_01047) - 1119966..1120211 (-) 246 WP_004246013.1 excisionase -
  KPK64_RS05220 (KPK64_01048) - 1120246..1120848 (-) 603 Protein_996 MT-A70 family methyltransferase -
  KPK64_RS19510 - 1120845..1121318 (-) 474 Protein_997 SAM-dependent methyltransferase -
  KPK64_RS05230 (KPK64_01050) - 1121362..1122057 (-) 696 WP_017827453.1 hypothetical protein -
  KPK64_RS05235 (KPK64_01051) ssb 1122129..1122638 (-) 510 WP_017827452.1 single-stranded DNA-binding protein Machinery gene
  KPK64_RS05240 (KPK64_01052) - 1122638..1123249 (-) 612 WP_017827451.1 ERF family protein -
  KPK64_RS05245 (KPK64_01053) - 1123251..1123571 (-) 321 WP_017628824.1 hypothetical protein -
  KPK64_RS05250 (KPK64_01054) - 1123568..1123720 (-) 153 WP_017628823.1 hypothetical protein -
  KPK64_RS05255 (KPK64_01055) - 1123717..1123971 (-) 255 WP_017628822.1 hypothetical protein -
  KPK64_RS05260 - 1123979..1124134 (-) 156 WP_164484711.1 hypothetical protein -
  KPK64_RS05265 (KPK64_01056) - 1124223..1124450 (-) 228 WP_004247466.1 hypothetical protein -
  KPK64_RS05270 (KPK64_01057) - 1124573..1124848 (-) 276 WP_134736551.1 hypothetical protein -
  KPK64_RS05275 (KPK64_01058) - 1125013..1125198 (+) 186 WP_004247469.1 hypothetical protein -
  KPK64_RS05280 (KPK64_01059) - 1125195..1125347 (-) 153 WP_004247470.1 hypothetical protein -
  KPK64_RS05285 (KPK64_01060) - 1125533..1125748 (+) 216 WP_135024233.1 hypothetical protein -
  KPK64_RS05290 (KPK64_01061) - 1125745..1125960 (-) 216 WP_135024230.1 hypothetical protein -
  KPK64_RS05295 (KPK64_01062) - 1125969..1126286 (-) 318 WP_017827445.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 19066.43 Da        Isoelectric Point: 6.9903

>NTDB_id=585730 KPK64_RS05235 WP_017827452.1 1122129..1122638(-) (ssb) [Proteus mirabilis strain 6Pmi283]
MASKGVNKVLLIGHLGQDPEMRYLPNGDAVTNITLATSDSWKDKQSGETKERVEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTEVVVNINGSMQILGNNNQAGSQKSQPSPHQHGWSLQQSPKRNEPPMDFDDDIPFAPIGLM
YPRHLINII

Nucleotide


Download         Length: 510 bp        

>NTDB_id=585730 KPK64_RS05235 WP_017827452.1 1122129..1122638(-) (ssb) [Proteus mirabilis strain 6Pmi283]
ATGGCAAGTAAAGGTGTAAACAAAGTCTTATTGATAGGACATCTAGGTCAAGATCCTGAAATGCGTTACCTCCCAAATGG
CGATGCAGTTACTAATATTACATTAGCCACCAGCGATTCATGGAAAGATAAACAATCAGGTGAAACCAAGGAACGTGTCG
AATGGCATAGAGTTGTGATATTTGGAAAGCTCGCCGAAATTGCTGGCGAATATCTGCGTAAAGGTTCACAAGTCTATATC
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAATGGACAAGACAGATACAGCACGGAAGTTGTAGTGAATATTAA
TGGCTCAATGCAAATTTTAGGTAACAACAATCAGGCTGGTAGCCAGAAATCACAACCATCACCTCATCAACACGGATGGA
GCCTTCAACAATCTCCTAAGCGTAATGAACCTCCAATGGATTTTGATGATGATATTCCTTTTGCGCCGATTGGGCTTATG
TATCCACGACATTTGATTAATATAATTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

63.277

100

0.663
  ssb Glaesserella parasuis strain SC1401

47.753

100

0.503
  ssb Neisseria gonorrhoeae MS11

42.045

100

0.438
  ssb Neisseria meningitidis MC58

42.045

100

0.438