Detailed information    

insolico Bioinformatically predicted

Overview


Name   ciaR   Type   Regulator
Locus tag   KVP03_RS07845 Genome accession   NZ_CP077959
Coordinates   1649963..1650637 (-) Length   224 a.a.
NCBI ID   WP_021320708.1    Uniprot ID   A0AAW3GMV5
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_14-145     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1644963..1655637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVP03_RS07795 (KVP03_07775) - 1645057..1645476 (-) 420 WP_111692735.1 hypothetical protein -
  KVP03_RS07800 (KVP03_07780) - 1645492..1645752 (-) 261 WP_154299136.1 hypothetical protein -
  KVP03_RS07805 (KVP03_07785) - 1645749..1646126 (-) 378 WP_111692736.1 hypothetical protein -
  KVP03_RS07810 (KVP03_07790) - 1646297..1646548 (-) 252 WP_111692737.1 hypothetical protein -
  KVP03_RS07815 (KVP03_07795) - 1646616..1646873 (-) 258 WP_230923019.1 hypothetical protein -
  KVP03_RS07820 (KVP03_07800) - 1646860..1647150 (-) 291 WP_230923020.1 hypothetical protein -
  KVP03_RS07825 (KVP03_07805) - 1647160..1647567 (-) 408 WP_014622815.1 hypothetical protein -
  KVP03_RS07830 (KVP03_07810) - 1647583..1647759 (-) 177 WP_014622814.1 hypothetical protein -
  KVP03_RS07835 (KVP03_07815) - 1647841..1648275 (-) 435 WP_012678015.1 hypothetical protein -
  KVP03_RS07840 (KVP03_07820) ciaH 1648660..1649970 (-) 1311 WP_012515549.1 sensor histidine kinase Regulator
  KVP03_RS07845 (KVP03_07825) ciaR 1649963..1650637 (-) 675 WP_021320708.1 response regulator transcription factor Regulator
  KVP03_RS07850 (KVP03_07830) - 1651056..1653593 (-) 2538 WP_043052123.1 M1 family metallopeptidase -
  KVP03_RS07855 (KVP03_07835) phoU 1653828..1654481 (-) 654 WP_012678018.1 phosphate signaling complex protein PhoU -
  KVP03_RS07860 (KVP03_07840) pstB 1654552..1655310 (-) 759 WP_012678019.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence


Protein


Download         Length: 224 a.a.        Molecular weight: 25569.58 Da        Isoelectric Point: 4.5644

>NTDB_id=585669 KVP03_RS07845 WP_021320708.1 1649963..1650637(-) (ciaR) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
MIKLLLVEDDLSLSNSIFDFLDDFADVTQVFDGDEGLYEAESGIYDLILLDLMLPEKDGFQVLKALREKDIKIPVLIMTA
KESIDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRVGKFNDKSLKFGNLTVDTTRKEVQVNGQVIELLGKELDLLIY
ILQNQNVILPKSQIFDRIWGFDSDTTISVVEVYVSKIRKKLKGTDFVNHLQTLRSVGYILKANE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=585669 KVP03_RS07845 WP_021320708.1 1649963..1650637(-) (ciaR) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
ATGATAAAACTATTATTAGTAGAAGACGATTTAAGCTTATCAAATTCCATCTTTGATTTTTTAGATGACTTTGCTGATGT
GACCCAGGTTTTTGATGGCGACGAAGGACTCTATGAGGCAGAAAGCGGCATTTATGATTTGATTCTGTTAGATTTGATGC
TGCCTGAAAAGGATGGCTTTCAAGTGCTAAAGGCCTTACGTGAAAAAGACATCAAAATTCCCGTCTTGATCATGACTGCC
AAAGAAAGCATTGATGACAAGGGACATGGCTTTGAGCTTGGTGCTGATGACTATTTAACCAAGCCCTTTTACCTAGAGGA
ATTAAAAATGCGGATTCAGGCCTTGCTTAAGCGCGTAGGAAAGTTTAATGATAAGAGCCTTAAATTTGGCAACCTGACTG
TAGATACTACCCGTAAAGAGGTACAGGTCAATGGGCAGGTCATAGAGCTATTAGGCAAGGAGCTTGATTTACTAATCTAT
ATCCTTCAAAATCAAAATGTTATTTTGCCAAAGTCACAAATTTTTGATCGTATCTGGGGCTTTGATAGTGATACCACTAT
CTCTGTTGTAGAGGTCTATGTCTCTAAAATCCGTAAGAAGCTTAAGGGGACAGACTTTGTTAATCATCTTCAAACCTTGA
GAAGTGTAGGATATATCTTAAAAGCTAATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

84.615

98.661

0.835

  ciaR Streptococcus pneumoniae Rx1

80.543

98.661

0.795

  ciaR Streptococcus pneumoniae D39

80.543

98.661

0.795

  ciaR Streptococcus pneumoniae R6

80.543

98.661

0.795

  ciaR Streptococcus pneumoniae TIGR4

80.543

98.661

0.795

  covR Lactococcus lactis subsp. lactis strain DGCC12653

38.865

100

0.397