Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KU496_RS10695 Genome accession   NZ_CP077936
Coordinates   2135387..2135857 (-) Length   156 a.a.
NCBI ID   WP_000934770.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 319     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2130387..2140857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU496_RS10630 (KU496_10550) - 2130410..2131060 (-) 651 WP_001005262.1 hypothetical protein -
  KU496_RS10635 (KU496_10555) rinB 2131219..2131368 (-) 150 WP_000595265.1 transcriptional activator RinB -
  KU496_RS10640 (KU496_10560) - 2131365..2131754 (-) 390 WP_001596346.1 hypothetical protein -
  KU496_RS10645 (KU496_10565) - 2131744..2131980 (-) 237 WP_000608275.1 hypothetical protein -
  KU496_RS10650 (KU496_10570) - 2131973..2132176 (-) 204 WP_000141180.1 hypothetical protein -
  KU496_RS10655 (KU496_10575) - 2132173..2132379 (-) 207 WP_000195794.1 DUF1381 domain-containing protein -
  KU496_RS10660 (KU496_10580) - 2132416..2132952 (-) 537 WP_000185671.1 dUTPase -
  KU496_RS10665 (KU496_10585) - 2132945..2133193 (-) 249 WP_015974517.1 DUF1024 family protein -
  KU496_RS10670 (KU496_10590) - 2133208..2133450 (-) 243 WP_000131381.1 phi PVL orf 51-like protein -
  KU496_RS10675 (KU496_10595) - 2133454..2133822 (-) 369 WP_225798539.1 SA1788 family PVL leukocidin-associated protein -
  KU496_RS10680 (KU496_10600) - 2133835..2134239 (-) 405 WP_000401964.1 RusA family crossover junction endodeoxyribonuclease -
  KU496_RS10685 (KU496_10605) - 2134248..2134466 (-) 219 WP_000338528.1 hypothetical protein -
  KU496_RS10690 (KU496_10610) - 2134473..2135357 (-) 885 WP_000148298.1 DnaD domain protein -
  KU496_RS10695 (KU496_10615) ssbA 2135387..2135857 (-) 471 WP_000934770.1 single-stranded DNA-binding protein Machinery gene
  KU496_RS10700 (KU496_10620) - 2135858..2136475 (-) 618 WP_072460574.1 MBL fold metallo-hydrolase -
  KU496_RS10705 (KU496_10625) - 2136556..2137476 (-) 921 WP_225798540.1 recombinase RecT -
  KU496_RS10710 (KU496_10630) - 2137478..2139433 (-) 1956 WP_064127293.1 AAA family ATPase -
  KU496_RS10715 (KU496_10635) - 2139430..2139693 (-) 264 WP_001205732.1 hypothetical protein -
  KU496_RS10720 (KU496_10640) - 2139702..2139962 (-) 261 WP_000291489.1 DUF1108 family protein -
  KU496_RS10725 (KU496_10645) - 2140055..2140216 (-) 162 WP_000066011.1 DUF1270 domain-containing protein -
  KU496_RS10730 (KU496_10650) - 2140213..2140533 (-) 321 WP_001120936.1 DUF771 domain-containing protein -
  KU496_RS10735 - 2140587..2140742 (+) 156 Protein_2089 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17713.63 Da        Isoelectric Point: 5.2672

>NTDB_id=585594 KU496_RS10695 WP_000934770.1 2135387..2135857(-) (ssbA) [Staphylococcus aureus strain 319]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=585594 KU496_RS10695 WP_000934770.1 2135387..2135857(-) (ssbA) [Staphylococcus aureus strain 319]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365