Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KU512_RS03020 Genome accession   NZ_CP077933
Coordinates   565816..566286 (+) Length   156 a.a.
NCBI ID   WP_000934770.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 359     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 560816..571286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU512_RS02985 (KU512_02970) - 561243..561464 (+) 222 WP_000594790.1 hypothetical protein -
  KU512_RS02990 (KU512_02975) - 561457..561618 (+) 162 WP_050956528.1 DUF1270 domain-containing protein -
  KU512_RS02995 (KU512_02980) - 561711..561971 (+) 261 WP_000291489.1 DUF1108 family protein -
  KU512_RS03000 (KU512_02985) - 561980..562243 (+) 264 WP_001205732.1 hypothetical protein -
  KU512_RS03005 (KU512_02990) - 562252..564195 (+) 1944 WP_000700562.1 AAA family ATPase -
  KU512_RS03010 (KU512_02995) - 564197..565117 (+) 921 WP_000138481.1 recombinase RecT -
  KU512_RS03015 (KU512_03000) - 565198..565815 (+) 618 WP_071621397.1 MBL fold metallo-hydrolase -
  KU512_RS03020 (KU512_03005) ssbA 565816..566286 (+) 471 WP_000934770.1 single-stranded DNA-binding protein Machinery gene
  KU512_RS03025 (KU512_03010) - 566316..567200 (+) 885 WP_000148301.1 DnaD domain protein -
  KU512_RS03030 (KU512_03015) - 567207..567425 (+) 219 WP_000338528.1 hypothetical protein -
  KU512_RS03035 (KU512_03020) - 567434..567838 (+) 405 WP_000401964.1 RusA family crossover junction endodeoxyribonuclease -
  KU512_RS03040 (KU512_03025) - 567851..568219 (+) 369 WP_000101274.1 SA1788 family PVL leukocidin-associated protein -
  KU512_RS03045 (KU512_03030) - 568223..568465 (+) 243 WP_000131366.1 SAV1978 family virulence-associated passenger protein -
  KU512_RS03050 (KU512_03035) - 568530..568979 (+) 450 WP_000982711.1 YopX family protein -
  KU512_RS03055 (KU512_03040) - 568976..569485 (+) 510 WP_001105598.1 hypothetical protein -
  KU512_RS03060 (KU512_03045) - 569482..569892 (+) 411 WP_000197967.1 hypothetical protein -
  KU512_RS03065 (KU512_03050) - 569885..570421 (+) 537 WP_001066444.1 dUTPase -
  KU512_RS03070 (KU512_03055) - 570458..570664 (+) 207 WP_000195820.1 DUF1381 domain-containing protein -
  KU512_RS03075 (KU512_03060) rinB 570661..570810 (+) 150 WP_000595265.1 transcriptional activator RinB -
  KU512_RS03080 (KU512_03065) - 570810..571010 (+) 201 WP_000265041.1 DUF1514 family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17713.63 Da        Isoelectric Point: 5.2672

>NTDB_id=585529 KU512_RS03020 WP_000934770.1 565816..566286(+) (ssbA) [Staphylococcus aureus strain 359]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=585529 KU512_RS03020 WP_000934770.1 565816..566286(+) (ssbA) [Staphylococcus aureus strain 359]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.551
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365