Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | KU512_RS00190 | Genome accession | NZ_CP077933 |
| Coordinates | 37376..37879 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain 359 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 37376..58430 | 37376..37879 | within | 0 |
Gene organization within MGE regions
Location: 37376..58430
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU512_RS00190 (KU512_00190) | ssbA | 37376..37879 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| KU512_RS00195 (KU512_00195) | rpsR | 37931..38173 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| KU512_RS00200 (KU512_00200) | - | 38355..39185 (-) | 831 | WP_000357934.1 | KilA-N domain-containing protein | - |
| KU512_RS00205 (KU512_00205) | - | 39668..40885 (-) | 1218 | WP_000270129.1 | tyrosine-type recombinase/integrase | - |
| KU512_RS00210 (KU512_00210) | - | 41148..41873 (-) | 726 | WP_000668215.1 | helix-turn-helix domain-containing protein | - |
| KU512_RS00215 (KU512_00215) | - | 42045..42257 (+) | 213 | WP_001245562.1 | helix-turn-helix domain-containing protein | - |
| KU512_RS00220 (KU512_00220) | - | 42258..42530 (+) | 273 | WP_001138300.1 | helix-turn-helix domain-containing protein | - |
| KU512_RS00225 (KU512_00225) | - | 42542..42697 (+) | 156 | WP_000784886.1 | hypothetical protein | - |
| KU512_RS00230 (KU512_00230) | - | 42682..42927 (+) | 246 | WP_001171847.1 | hypothetical protein | - |
| KU512_RS00235 (KU512_00235) | - | 42887..43270 (+) | 384 | WP_000403843.1 | hypothetical protein | - |
| KU512_RS00240 (KU512_00240) | tscT | 43271..43570 (+) | 300 | WP_048665656.1 | type II toxin-antitoxin system toxin TscT | - |
| KU512_RS00245 (KU512_00245) | - | 43645..45261 (+) | 1617 | WP_050956491.1 | hypothetical protein | - |
| KU512_RS00250 (KU512_00250) | - | 45437..46240 (+) | 804 | WP_000148373.1 | bifunctional DNA primase/polymerase | - |
| KU512_RS00255 (KU512_00255) | - | 46227..46499 (+) | 273 | WP_001149389.1 | hypothetical protein | - |
| KU512_RS00260 (KU512_00260) | - | 46501..47142 (+) | 642 | WP_050956490.1 | pathogenicity island protein | - |
| KU512_RS00265 (KU512_00265) | - | 47716..48057 (+) | 342 | WP_001161659.1 | hypothetical protein | - |
| KU512_RS00270 (KU512_00270) | - | 48069..48647 (+) | 579 | WP_000846292.1 | hypothetical protein | - |
| KU512_RS00275 (KU512_00275) | - | 48665..48883 (+) | 219 | WP_000448775.1 | capsid morphogenesis B protein | - |
| KU512_RS00280 (KU512_00280) | - | 48934..49461 (+) | 528 | WP_000771356.1 | spore coat protein | - |
| KU512_RS00285 (KU512_00285) | - | 49464..49805 (+) | 342 | WP_000358778.1 | hypothetical protein | - |
| KU512_RS00290 (KU512_00290) | - | 49802..50371 (+) | 570 | WP_001293072.1 | terminase small subunit | - |
| KU512_RS00295 (KU512_00295) | - | 50446..50805 (-) | 360 | WP_000935290.1 | hypothetical protein | - |
| KU512_RS00300 (KU512_00300) | - | 50922..51311 (-) | 390 | WP_000362902.1 | hypothetical protein | - |
| KU512_RS00305 (KU512_00305) | - | 51313..52524 (-) | 1212 | WP_009558370.1 | hypothetical protein | - |
| KU512_RS00310 (KU512_00310) | - | 52617..52946 (+) | 330 | WP_412072694.1 | DUF1433 domain-containing protein | - |
| KU512_RS00315 (KU512_00315) | - | 53061..53504 (+) | 444 | WP_000022885.1 | GNAT family N-acetyltransferase | - |
| KU512_RS00320 (KU512_00320) | - | 54044..54982 (-) | 939 | WP_001822249.1 | Abi family protein | - |
| KU512_RS00325 (KU512_00325) | - | 55021..55722 (-) | 702 | Protein_64 | tyrosine-type recombinase/integrase | - |
| KU512_RS00330 (KU512_00330) | selX | 55928..56539 (+) | 612 | WP_000475326.1 | staphylococcal enterotoxin-like toxin X | - |
| KU512_RS00335 (KU512_00335) | - | 56908..57276 (+) | 369 | WP_000849177.1 | YxeA family protein | - |
| KU512_RS00340 (KU512_00340) | - | 57457..58029 (+) | 573 | WP_000769720.1 | PepSY domain-containing protein | - |
| KU512_RS00345 (KU512_00345) | - | 58167..58430 (-) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=585523 KU512_RS00190 WP_000934799.1 37376..37879(+) (ssbA) [Staphylococcus aureus strain 359]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=585523 KU512_RS00190 WP_000934799.1 37376..37879(+) (ssbA) [Staphylococcus aureus strain 359]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |