Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MDRSPN_RS00830 Genome accession   NZ_AP018391
Coordinates   153872..154465 (+) Length   197 a.a.
NCBI ID   WP_120164157.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain MDRSPN001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 148872..159465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDRSPN_RS00800 (MDRSPN_00146) - 149682..150215 (+) 534 WP_120164152.1 ABC transporter permease -
  MDRSPN_RS00805 (MDRSPN_00147) nrdI 150293..150757 (+) 465 WP_120164153.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  MDRSPN_RS00810 (MDRSPN_00148) - 150805..151263 (-) 459 WP_120164154.1 DUF3021 domain-containing protein -
  MDRSPN_RS00815 (MDRSPN_00149) - 151260..151700 (-) 441 WP_120164155.1 LytTR family DNA-binding domain-containing protein -
  MDRSPN_RS00825 (MDRSPN_00150) hexB 151907..153856 (+) 1950 WP_120164156.1 DNA mismatch repair endonuclease MutL Machinery gene
  MDRSPN_RS00830 (MDRSPN_00151) ruvA 153872..154465 (+) 594 WP_120164157.1 Holliday junction branch migration protein RuvA Machinery gene
  MDRSPN_RS00835 (MDRSPN_00152) - 154475..155038 (+) 564 WP_120164158.1 DNA-3-methyladenine glycosylase I -
  MDRSPN_RS00840 (MDRSPN_00153) - 155122..155385 (-) 264 WP_000166114.1 SemiSWEET family transporter -
  MDRSPN_RS00845 (MDRSPN_00154) - 155491..156525 (-) 1035 WP_049487390.1 S66 peptidase family protein -
  MDRSPN_RS00850 (MDRSPN_00155) - 156687..157034 (-) 348 WP_000331824.1 hypothetical protein -
  MDRSPN_RS00855 (MDRSPN_00156) - 157050..157727 (-) 678 WP_042751760.1 DUF1129 domain-containing protein -
  MDRSPN_RS00860 (MDRSPN_00157) - 157739..158683 (-) 945 WP_000815623.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21766.33 Da        Isoelectric Point: 6.2546

>NTDB_id=58498 MDRSPN_RS00830 WP_120164157.1 153872..154465(+) (ruvA) [Streptococcus pneumoniae strain MDRSPN001]
MYEYLKGIITKITAKYIVLEVNCIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVVSDDLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=58498 MDRSPN_RS00830 WP_120164157.1 153872..154465(+) (ruvA) [Streptococcus pneumoniae strain MDRSPN001]
ATGTACGAATATTTAAAAGGAATCATTACCAAAATCACTGCTAAATACATTGTTCTTGAAGTCAACTGTATCGGCTATAT
CTTGCATGTGGCCAATCCTTATGCCTACTCAGGACAGGTTAATCAGGAGGCTCAGATTTATGTGCATCAGGTTGTGCGTG
AGGACGCCCATCTGCTTTATGGTTTTCGCTCAGAAGACGAGAAGAAGCTCTTTCTCAGTCTGATTTCGGTGTCTGGGATT
GGGCCTGTATCAGCTCTTGCTATTATTGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATTGAAACCAAGAACATCAC
CTACTTGACTAAGTTTCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGTTGGACTTGGAAGGCAAGGTAGTAGTGG
TTAGTGATGATCTTCCTGCCAAGGTGGCAGTGCAAGCTAGCGCTGAAAACCAAGAACTGGAAGAAGCCATGGAAGCCATG
TTGGCTCTGGGCTACAAGGCGACAGAGCTCAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCGGCCCTTAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

97.462

100

0.975
  ruvA Streptococcus pneumoniae R6

96.954

100

0.97
  ruvA Streptococcus pneumoniae D39

96.954

100

0.97
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411

Multiple sequence alignment