Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KU535_RS01100 Genome accession   NZ_CP077915
Coordinates   228684..229370 (+) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 282     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 223684..234370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU535_RS01065 (KU535_01050) yqeH 224211..225311 (+) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -
  KU535_RS01070 (KU535_01055) aroE 225325..226131 (+) 807 WP_000666744.1 shikimate dehydrogenase -
  KU535_RS01075 (KU535_01060) yhbY 226135..226425 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  KU535_RS01080 (KU535_01065) nadD 226428..226997 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  KU535_RS01085 (KU535_01070) yqeK 226987..227571 (+) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  KU535_RS01090 (KU535_01075) rsfS 227572..227925 (+) 354 WP_001088020.1 ribosome silencing factor -
  KU535_RS01095 (KU535_01080) - 227928..228644 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  KU535_RS01100 (KU535_01085) comEA 228684..229370 (+) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  KU535_RS01105 (KU535_01090) - 229462..229923 (+) 462 WP_000439693.1 ComE operon protein 2 -
  KU535_RS01110 (KU535_01095) comEC 229928..232129 (+) 2202 WP_225806597.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KU535_RS01115 (KU535_01100) holA 232186..233160 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  KU535_RS01120 (KU535_01105) rpsT 233205..233456 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=584939 KU535_RS01100 WP_001788928.1 228684..229370(+) (comEA) [Staphylococcus aureus strain 282]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=584939 KU535_RS01100 WP_001788928.1 228684..229370(+) (comEA) [Staphylococcus aureus strain 282]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969