Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MYL38_RS02260 Genome accession   NZ_CP095820
Coordinates   473418..473954 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Jnd12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 468418..478954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYL38_RS02240 (MYL38_02240) aphA 468706..469419 (+) 714 WP_001317548.1 acid phosphatase AphA -
  MYL38_RS02245 (MYL38_02245) yjbQ 469530..469946 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MYL38_RS02250 (MYL38_02250) yjbR 469950..470306 (+) 357 WP_000155648.1 MmcQ/YjbR family DNA-binding protein -
  MYL38_RS02255 (MYL38_02255) uvrA 470341..473163 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  MYL38_RS02260 (MYL38_02260) ssb 473418..473954 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MYL38_RS02265 (MYL38_02265) yjcB 474053..474334 (-) 282 WP_001295689.1 YjcB family protein -
  MYL38_RS02270 (MYL38_02270) pdeC 474763..476349 (+) 1587 WP_000017978.1 c-di-GMP phosphodiesterase PdeC -
  MYL38_RS02275 (MYL38_02275) soxS 476352..476675 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  MYL38_RS02280 (MYL38_02280) soxR 476761..477225 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=584939 MYL38_RS02260 WP_000168305.1 473418..473954(+) (ssb) [Escherichia coli strain Jnd12]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=584939 MYL38_RS02260 WP_000168305.1 473418..473954(+) (ssb) [Escherichia coli strain Jnd12]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489