Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   I872_RS08480 Genome accession   NC_021175
Coordinates   1721408..1723366 (-) Length   652 a.a.
NCBI ID   WP_015605696.1    Uniprot ID   A0A512ADV2
Organism   Streptococcus cristatus AS 1.3089     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1716408..1728366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS08455 (I872_08480) - 1716420..1717409 (+) 990 WP_005591780.1 PTS sugar transporter subunit IIB -
  I872_RS08460 (I872_08485) - 1717454..1718257 (+) 804 WP_015605692.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  I872_RS08465 (I872_08490) - 1718276..1719187 (+) 912 WP_015605693.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  I872_RS08470 (I872_08495) - 1719258..1719629 (+) 372 WP_015605694.1 DUF956 family protein -
  I872_RS08475 (I872_08500) serS 1719842..1721119 (+) 1278 WP_015605695.1 serine--tRNA ligase -
  I872_RS08480 (I872_08505) amiA 1721408..1723366 (-) 1959 WP_015605696.1 peptide ABC transporter substrate-binding protein Regulator
  I872_RS08485 (I872_08510) pbp3 1723647..1724924 (+) 1278 WP_015605697.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  I872_RS08490 (I872_08515) sufB 1725118..1726530 (-) 1413 WP_015605698.1 Fe-S cluster assembly protein SufB -
  I872_RS08495 (I872_08520) sufU 1726548..1726985 (-) 438 WP_015605699.1 Fe-S cluster assembly sulfur transfer protein SufU -
  I872_RS08500 (I872_08525) - 1726972..1728204 (-) 1233 WP_015605700.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72606.69 Da        Isoelectric Point: 4.7288

>NTDB_id=58473 I872_RS08480 WP_015605696.1 1721408..1723366(-) (amiA) [Streptococcus cristatus AS 1.3089]
MKKSKWLAITGLVAASALFLAACGKSSTSSAKTYSYVYNTDPDTLDYVNSNRASTSDVIANLVDGLLENDQYGNLILSLA
EDWTVSKDGLTYTYKLRKDAKWYTAEGEEYAAVKAQDFVTGLKHAADEKSEALPIVQNSIKGLDAYIKGESNDFSTVGVK
AIDDYTVQYTLNQPESYWNSKTTMGILFPINEEFLKKEGKDFGTVKPSGILYNGPYVLKSFTSKSVIEYSKNQNYWDKDN
VKIEDVKLTYYDGSDQESLIRNFTDGAYTQARLYPTSSNYASVEKKYKDNIIFTPQNSTSYFYAFNLNRQAYSHTSKTDA
QKAASKEAIQNKDFRQAINFAFDRKSFGAQMNGNEGATKIIRSSLVPPSFVQVDGKDFSDVVESQLASYGDEWQGVKLAD
AQDSIYNPEKAKAEFAKAKEALQAQGVEFPIHLDVPVDQTDKIMVQRTNSFKQSVEAALGQENVVIDVHQMSSDDFDNST
YFAETAAQKDYDLNMSGWSADYQDPVTYLNIFNPETGDILDNIGLTKGQNQDVASKVGLTDYKALLDKADVEKQDTNARY
TKYAAAQAWLTDSSIVIPSISAGGSPTVQKVVPFTKAYSYVGIKGDSYVFKGMELQDEVLTVADYQKALKKWEKEKEESN
KKAQEELASHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=58473 I872_RS08480 WP_015605696.1 1721408..1723366(-) (amiA) [Streptococcus cristatus AS 1.3089]
ATGAAAAAATCTAAATGGTTGGCTATTACTGGTTTGGTTGCAGCATCAGCGCTATTTTTAGCAGCTTGTGGCAAGTCAAG
CACTAGCTCGGCAAAGACATATTCTTATGTCTATAATACAGATCCAGATACATTGGATTATGTAAACTCCAATCGCGCCT
CCACTTCTGATGTCATTGCCAATTTGGTCGACGGTCTTTTAGAAAATGATCAATATGGGAATCTTATCCTTTCATTGGCT
GAAGACTGGACTGTGTCTAAAGACGGCCTGACTTATACTTATAAGTTGCGTAAGGACGCTAAATGGTACACAGCAGAAGG
TGAAGAGTACGCTGCTGTCAAGGCACAAGACTTTGTAACAGGACTCAAGCACGCTGCAGATGAAAAATCAGAAGCATTAC
CAATCGTGCAAAACTCTATCAAGGGATTAGATGCTTATATCAAAGGGGAAAGCAATGATTTCTCTACTGTCGGTGTCAAG
GCAATCGACGACTATACAGTCCAATACACCCTGAATCAGCCAGAAAGCTATTGGAATTCTAAGACAACGATGGGCATTCT
CTTCCCAATTAACGAAGAATTTCTAAAGAAAGAAGGCAAAGATTTTGGTACCGTGAAACCTTCCGGCATCCTCTACAATG
GTCCATATGTATTAAAGTCATTTACTTCTAAGTCTGTTATCGAATACTCTAAAAACCAAAACTATTGGGACAAGGACAAT
GTGAAGATCGAAGATGTCAAGCTGACTTACTACGATGGTTCTGACCAAGAGTCATTGATCCGTAACTTTACTGATGGTGC
TTACACACAAGCTCGTCTCTATCCGACTAGCTCAAACTACGCATCAGTAGAAAAGAAATACAAAGACAACATCATCTTTA
CTCCACAAAATTCAACTAGCTATTTCTATGCCTTTAACTTGAATCGTCAGGCTTATAGCCACACTTCTAAGACAGATGCC
CAAAAGGCTGCCAGCAAAGAAGCGATTCAAAATAAAGACTTCCGTCAGGCAATTAACTTTGCTTTTGACCGTAAATCCTT
TGGTGCCCAGATGAATGGTAATGAAGGAGCAACCAAGATCATCAGAAGCTCGCTTGTACCTCCTAGTTTTGTGCAAGTAG
ATGGCAAGGACTTCTCGGATGTTGTTGAATCACAACTGGCTTCTTATGGGGATGAATGGCAAGGTGTCAAATTAGCTGAT
GCCCAAGACAGCATTTACAACCCAGAAAAGGCCAAGGCAGAATTTGCTAAAGCAAAAGAAGCTTTGCAAGCACAGGGAGT
TGAATTCCCAATTCATCTAGATGTACCAGTTGACCAAACTGATAAAATCATGGTGCAGCGGACCAATTCCTTCAAACAAT
CTGTTGAGGCAGCTCTAGGCCAAGAAAACGTTGTGATTGACGTGCATCAAATGTCATCAGACGATTTTGATAACTCTACT
TACTTCGCAGAAACAGCTGCCCAAAAGGATTATGACCTCAATATGTCTGGTTGGTCAGCGGACTATCAAGACCCAGTAAC
TTATCTGAATATCTTTAACCCAGAAACAGGGGATATCTTGGACAATATTGGTCTGACAAAAGGCCAAAACCAAGATGTTG
CTTCCAAGGTTGGTTTAACTGACTACAAGGCACTTTTGGACAAAGCAGATGTAGAAAAGCAAGATACGAATGCTCGTTAT
ACGAAGTATGCAGCGGCTCAGGCTTGGTTAACAGATAGCTCTATTGTTATCCCATCTATTTCTGCGGGTGGTTCACCAAC
CGTTCAAAAAGTCGTACCATTTACCAAAGCCTACTCTTATGTAGGTATCAAGGGTGATAGCTATGTATTTAAGGGCATGG
AACTTCAAGATGAGGTTCTGACAGTGGCTGATTATCAAAAAGCTTTGAAAAAATGGGAAAAAGAAAAAGAAGAGTCAAAT
AAAAAAGCTCAAGAAGAGTTAGCAAGTCACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512ADV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.25

100

0.566
  amiA3 Streptococcus thermophilus LMD-9

56.079

100

0.566
  amiA3 Streptococcus thermophilus LMG 18311

55.927

100

0.564

Multiple sequence alignment