Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KU519_RS06890 Genome accession   NZ_CP077888
Coordinates   1353900..1354403 (+) Length   167 a.a.
NCBI ID   WP_182055356.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 334     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1348900..1359403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU519_RS06860 (KU519_06865) - 1349837..1350682 (+) 846 WP_225806540.1 ParB/RepB/Spo0J family partition protein -
  KU519_RS06865 (KU519_06870) - 1350839..1351720 (+) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  KU519_RS06870 (KU519_06875) - 1351750..1351953 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  KU519_RS06875 (KU519_06880) ychF 1351965..1353062 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  KU519_RS06880 (KU519_06885) - 1353148..1353339 (-) 192 WP_001052483.1 hypothetical protein -
  KU519_RS06885 (KU519_06890) rpsF 1353583..1353879 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  KU519_RS06890 (KU519_06895) ssbA 1353900..1354403 (+) 504 WP_182055356.1 single-stranded DNA-binding protein Machinery gene
  KU519_RS06895 (KU519_06900) rpsR 1354455..1354697 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  KU519_RS06900 (KU519_06905) - 1354963..1355901 (-) 939 WP_001822249.1 Abi family protein -
  KU519_RS06905 (KU519_06910) - 1355940..1356641 (-) 702 Protein_1327 tyrosine-type recombinase/integrase -
  KU519_RS06910 (KU519_06915) selX 1356847..1357458 (+) 612 WP_000475326.1 staphylococcal enterotoxin-like toxin X -
  KU519_RS06915 (KU519_06920) - 1357827..1358195 (+) 369 WP_000849177.1 YxeA family protein -
  KU519_RS06920 (KU519_06925) - 1358376..1358948 (+) 573 WP_000769720.1 PepSY domain-containing protein -
  KU519_RS06925 (KU519_06930) - 1359086..1359349 (-) 264 WP_001055897.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18505.10 Da        Isoelectric Point: 4.7305

>NTDB_id=584567 KU519_RS06890 WP_182055356.1 1353900..1354403(+) (ssbA) [Staphylococcus aureus strain 334]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGLGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=584567 KU519_RS06890 WP_182055356.1 1353900..1354403(+) (ssbA) [Staphylococcus aureus strain 334]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGACTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.683
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365