Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | KU497_RS08515 | Genome accession | NZ_CP077880 |
| Coordinates | 1674210..1674680 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain 356 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1642993..1687693 | 1674210..1674680 | within | 0 |
Gene organization within MGE regions
Location: 1642993..1687693
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU497_RS08290 (KU497_08280) | - | 1642993..1643550 (-) | 558 | WP_000528632.1 | PBECR4 domain-containing protein | - |
| KU497_RS08295 (KU497_08285) | - | 1644186..1644371 (-) | 186 | WP_001286805.1 | hypothetical protein | - |
| KU497_RS08300 (KU497_08290) | - | 1644373..1644483 (-) | 111 | WP_000139423.1 | hypothetical protein | - |
| KU497_RS08305 (KU497_08295) | - | 1644554..1644706 (-) | 153 | WP_001788502.1 | hypothetical protein | - |
| KU497_RS08310 (KU497_08300) | - | 1644951..1645289 (-) | 339 | Protein_1604 | SH3 domain-containing protein | - |
| KU497_RS08315 (KU497_08305) | sak | 1645937..1646428 (-) | 492 | WP_000920038.1 | staphylokinase | - |
| KU497_RS08320 (KU497_08310) | - | 1646619..1647374 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| KU497_RS08325 (KU497_08315) | - | 1647386..1647640 (-) | 255 | WP_000611512.1 | phage holin | - |
| KU497_RS08330 (KU497_08320) | - | 1647692..1647799 (+) | 108 | WP_031762631.1 | hypothetical protein | - |
| KU497_RS08335 (KU497_08325) | pepG1 | 1647852..1647986 (-) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| KU497_RS08340 (KU497_08330) | sea | 1648137..1648910 (-) | 774 | WP_000750412.1 | staphylococcal enterotoxin type A | - |
| KU497_RS08345 (KU497_08335) | - | 1649283..1649657 (-) | 375 | WP_000340977.1 | hypothetical protein | - |
| KU497_RS08350 (KU497_08340) | - | 1649713..1650000 (-) | 288 | WP_001262621.1 | hypothetical protein | - |
| KU497_RS08355 (KU497_08345) | - | 1650046..1650198 (-) | 153 | WP_001000058.1 | hypothetical protein | - |
| KU497_RS08360 (KU497_08350) | - | 1650191..1653973 (-) | 3783 | WP_050956529.1 | phage tail spike protein | - |
| KU497_RS08365 (KU497_08355) | - | 1653989..1655473 (-) | 1485 | WP_000567408.1 | phage distal tail protein | - |
| KU497_RS08370 (KU497_08360) | - | 1655470..1659999 (-) | 4530 | WP_225806135.1 | phage tail tape measure protein | - |
| KU497_RS08375 (KU497_08365) | gpGT | 1660056..1660193 (-) | 138 | WP_001549167.1 | phage tail assembly chaperone GT | - |
| KU497_RS08380 (KU497_08370) | gpG | 1660244..1660594 (-) | 351 | WP_001096355.1 | phage tail assembly chaperone G | - |
| KU497_RS08385 (KU497_08375) | - | 1660644..1660868 (-) | 225 | WP_072050172.1 | Ig-like domain-containing protein | - |
| KU497_RS08390 (KU497_08380) | - | 1660910..1661554 (-) | 645 | WP_000268741.1 | major tail protein | - |
| KU497_RS08395 (KU497_08385) | - | 1661555..1661962 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| KU497_RS08400 (KU497_08390) | - | 1661959..1662363 (-) | 405 | WP_000114225.1 | HK97 gp10 family phage protein | - |
| KU497_RS08405 (KU497_08395) | - | 1662360..1662722 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| KU497_RS08410 (KU497_08400) | - | 1662706..1662990 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| KU497_RS08415 (KU497_08405) | - | 1662980..1663264 (-) | 285 | WP_000238236.1 | hypothetical protein | - |
| KU497_RS08420 (KU497_08410) | - | 1663284..1664429 (-) | 1146 | WP_000154555.1 | phage major capsid protein | - |
| KU497_RS08425 (KU497_08415) | - | 1664453..1665190 (-) | 738 | WP_000861914.1 | head maturation protease, ClpP-related | - |
| KU497_RS08430 (KU497_08420) | - | 1665174..1666361 (-) | 1188 | WP_000025274.1 | phage portal protein | - |
| KU497_RS08435 (KU497_08425) | - | 1666377..1668038 (-) | 1662 | WP_000625088.1 | terminase large subunit | - |
| KU497_RS08440 (KU497_08430) | - | 1668035..1668379 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| KU497_RS08445 (KU497_08435) | - | 1668511..1668810 (-) | 300 | WP_000988336.1 | HNH endonuclease | - |
| KU497_RS08450 (KU497_08440) | - | 1669042..1669458 (-) | 417 | WP_000590126.1 | hypothetical protein | - |
| KU497_RS08455 (KU497_08445) | - | 1669486..1669686 (-) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| KU497_RS08460 (KU497_08450) | rinB | 1669686..1669835 (-) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| KU497_RS08465 (KU497_08455) | - | 1669832..1670038 (-) | 207 | WP_000195820.1 | DUF1381 domain-containing protein | - |
| KU497_RS08470 (KU497_08460) | - | 1670075..1670611 (-) | 537 | WP_001066444.1 | dUTPase | - |
| KU497_RS08475 (KU497_08465) | - | 1670604..1671014 (-) | 411 | WP_000197967.1 | hypothetical protein | - |
| KU497_RS08480 (KU497_08470) | - | 1671011..1671520 (-) | 510 | WP_001105598.1 | hypothetical protein | - |
| KU497_RS08485 (KU497_08475) | - | 1671517..1671966 (-) | 450 | WP_000982711.1 | YopX family protein | - |
| KU497_RS08490 (KU497_08480) | - | 1672031..1672273 (-) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| KU497_RS08495 (KU497_08485) | - | 1672277..1672645 (-) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| KU497_RS08500 (KU497_08490) | - | 1672658..1673062 (-) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| KU497_RS08505 (KU497_08495) | - | 1673071..1673289 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| KU497_RS08510 (KU497_08500) | - | 1673296..1674180 (-) | 885 | WP_000148301.1 | DnaD domain protein | - |
| KU497_RS08515 (KU497_08505) | ssbA | 1674210..1674680 (-) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| KU497_RS08520 (KU497_08510) | - | 1674681..1675298 (-) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| KU497_RS08525 (KU497_08515) | - | 1675379..1676299 (-) | 921 | WP_000138481.1 | recombinase RecT | - |
| KU497_RS08530 (KU497_08520) | - | 1676301..1678244 (-) | 1944 | WP_000700562.1 | AAA family ATPase | - |
| KU497_RS08535 (KU497_08525) | - | 1678253..1678516 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| KU497_RS08540 (KU497_08530) | - | 1678525..1678785 (-) | 261 | WP_000291489.1 | DUF1108 family protein | - |
| KU497_RS08545 (KU497_08535) | - | 1678878..1679039 (-) | 162 | WP_050956528.1 | DUF1270 domain-containing protein | - |
| KU497_RS08550 (KU497_08540) | - | 1679032..1679253 (-) | 222 | WP_000594790.1 | hypothetical protein | - |
| KU497_RS08555 (KU497_08545) | - | 1679324..1679956 (+) | 633 | WP_050956527.1 | hypothetical protein | - |
| KU497_RS08560 (KU497_08550) | - | 1679971..1680111 (-) | 141 | WP_000939496.1 | hypothetical protein | - |
| KU497_RS08565 (KU497_08555) | - | 1680142..1680336 (-) | 195 | WP_000388066.1 | hypothetical protein | - |
| KU497_RS08570 (KU497_08560) | - | 1680353..1681105 (-) | 753 | WP_001148618.1 | phage antirepressor KilAC domain-containing protein | - |
| KU497_RS08575 (KU497_08565) | - | 1681162..1681701 (+) | 540 | WP_000351243.1 | hypothetical protein | - |
| KU497_RS08580 (KU497_08570) | - | 1681725..1681985 (-) | 261 | WP_000435341.1 | transcriptional regulator | - |
| KU497_RS08585 (KU497_08575) | - | 1682011..1682787 (-) | 777 | WP_031900794.1 | Rha family transcriptional regulator | - |
| KU497_RS08590 (KU497_08580) | - | 1682810..1683037 (-) | 228 | WP_015978369.1 | helix-turn-helix transcriptional regulator | - |
| KU497_RS08595 (KU497_08585) | - | 1683191..1683820 (+) | 630 | WP_031881520.1 | LexA family protein | - |
| KU497_RS08600 (KU497_08590) | - | 1683876..1684859 (+) | 984 | WP_001558608.1 | glycosyltransferase family 2 protein | - |
| KU497_RS08605 (KU497_08595) | - | 1684870..1685112 (+) | 243 | WP_031900793.1 | hypothetical protein | - |
| KU497_RS08610 (KU497_08600) | - | 1685179..1686228 (+) | 1050 | WP_031764589.1 | tyrosine-type recombinase/integrase | - |
| KU497_RS08615 (KU497_08605) | sufB | 1686296..1687693 (-) | 1398 | WP_001074405.1 | Fe-S cluster assembly protein SufB | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=584499 KU497_RS08515 WP_000934770.1 1674210..1674680(-) (ssbA) [Staphylococcus aureus strain 356]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=584499 KU497_RS08515 WP_000934770.1 1674210..1674680(-) (ssbA) [Staphylococcus aureus strain 356]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |