Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   I872_RS05700 Genome accession   NC_021175
Coordinates   1144820..1145620 (-) Length   266 a.a.
NCBI ID   WP_015605196.1    Uniprot ID   -
Organism   Streptococcus cristatus AS 1.3089     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1139820..1150620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I872_RS05690 (I872_05715) rnc 1143318..1144004 (-) 687 WP_015605194.1 ribonuclease III -
  I872_RS05695 (I872_05720) - 1144149..1144508 (-) 360 WP_015605195.1 YbaN family protein -
  I872_RS05700 (I872_05725) vicX 1144820..1145620 (-) 801 WP_015605196.1 MBL fold metallo-hydrolase Regulator
  I872_RS05705 (I872_05730) micB 1145613..1146977 (-) 1365 WP_015605197.1 cell wall metabolism sensor histidine kinase VicK Regulator
  I872_RS05710 (I872_05735) micA 1146970..1147671 (-) 702 WP_015605198.1 response regulator YycF Regulator
  I872_RS05715 (I872_05740) - 1147934..1149016 (+) 1083 WP_015605199.1 M24 family metallopeptidase -
  I872_RS05720 (I872_05745) - 1149092..1149571 (-) 480 WP_041826807.1 hypothetical protein -
  I872_RS05725 (I872_05750) - 1149841..1150290 (-) 450 WP_015605201.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29774.78 Da        Isoelectric Point: 5.9437

>NTDB_id=58449 I872_RS05700 WP_015605196.1 1144820..1145620(-) (vicX) [Streptococcus cristatus AS 1.3089]
MTKGFQYSILASGSSGNCFYLETDQKRLLVDAGLSGKKITSLLSEIDRKPEDLDAILVTHEHKDHIHGVGVLARKYNLDI
YANEATWRAMEKDLGKLDASQKHIFEMGKMKTFGDLDVESFGVSHDAAAPQFYRFMKDGKSFVMLTDTGYVSDRMAGVIE
NADAYLIESNHDIEILRSGAYPWSLKQRILSDLGHLSNEDGAETMIRTLGNRTKRIYLGHLSKENNIKELAHMTMVNQLA
QADLPVGHDFQVFDTFPDTATPLVTI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=58449 I872_RS05700 WP_015605196.1 1144820..1145620(-) (vicX) [Streptococcus cristatus AS 1.3089]
ATGACTAAGGGATTTCAATATAGTATTCTAGCATCGGGATCGAGCGGCAATTGCTTTTATCTGGAAACAGACCAAAAACG
CCTGCTTGTCGATGCTGGTCTATCAGGGAAAAAGATTACGAGCCTTTTAAGCGAAATCGACCGCAAACCAGAGGATTTAG
ATGCTATTTTGGTCACCCATGAGCACAAGGATCACATCCATGGTGTAGGGGTCTTGGCGCGTAAGTACAATCTAGATATT
TATGCCAACGAAGCAACCTGGCGAGCGATGGAAAAGGACTTGGGCAAGCTGGATGCCAGTCAGAAGCATATCTTTGAAAT
GGGTAAAATGAAGACTTTTGGCGATTTAGATGTCGAAAGTTTTGGGGTTAGCCACGATGCGGCTGCTCCCCAGTTTTATC
GTTTTATGAAGGATGGCAAGAGCTTTGTCATGCTGACGGATACGGGTTATGTTAGTGACCGCATGGCCGGAGTGATTGAG
AATGCGGATGCTTATTTGATTGAGAGCAATCATGATATCGAGATTCTCCGGAGCGGTGCCTACCCGTGGAGCCTGAAACA
GCGCATCCTGTCTGACTTGGGACATTTATCCAATGAAGATGGTGCGGAAACCATGATTCGCACCCTTGGCAATCGCACCA
AGCGCATCTATCTGGGGCATTTGAGTAAGGAAAATAATATCAAGGAGCTGGCTCATATGACCATGGTCAATCAACTGGCT
CAAGCTGACTTGCCAGTAGGTCATGATTTTCAGGTCTTTGATACTTTTCCTGATACAGCGACGCCTTTGGTAACTATCTA
A

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(14-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

79.848

98.872

0.789

Multiple sequence alignment