Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MX625_RS26865 Genome accession   NZ_CP095774
Coordinates   5746654..5747151 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 34Pae8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5741654..5752151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX625_RS26845 pchD 5742438..5744081 (+) 1644 WP_229601984.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  MX625_RS26850 pchC 5744078..5744833 (+) 756 WP_003093651.1 pyochelin biosynthesis editing thioesterase PchC -
  MX625_RS26855 pchB 5744833..5745138 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  MX625_RS26860 pchA 5745135..5746565 (+) 1431 WP_003093658.1 isochorismate synthase PchA -
  MX625_RS26865 ssb 5746654..5747151 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  MX625_RS26870 - 5747168..5748556 (-) 1389 WP_003103910.1 MFS transporter -
  MX625_RS26875 uvrA 5748770..5751607 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  MX625_RS26880 bfr 5751679..5752143 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=584475 MX625_RS26865 WP_003114685.1 5746654..5747151(-) (ssb) [Pseudomonas aeruginosa strain 34Pae8]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=584475 MX625_RS26865 WP_003114685.1 5746654..5747151(-) (ssb) [Pseudomonas aeruginosa strain 34Pae8]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515