Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KU522_RS05905 Genome accession   NZ_CP077877
Coordinates   1217018..1217521 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain 357     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1212018..1222521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU522_RS05875 (KU522_05880) - 1212955..1213800 (+) 846 WP_001550052.1 ParB/RepB/Spo0J family partition protein -
  KU522_RS05880 (KU522_05885) - 1213957..1214838 (+) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  KU522_RS05885 (KU522_05890) - 1214868..1215071 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  KU522_RS05890 (KU522_05895) ychF 1215083..1216180 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  KU522_RS05895 (KU522_05900) - 1216266..1216457 (-) 192 WP_001052483.1 hypothetical protein -
  KU522_RS05900 (KU522_05905) rpsF 1216701..1216997 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  KU522_RS05905 (KU522_05910) ssbA 1217018..1217521 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  KU522_RS05910 (KU522_05915) rpsR 1217573..1217815 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  KU522_RS05915 (KU522_05920) - 1217997..1218827 (-) 831 WP_000357934.1 KilA-N domain-containing protein -
  KU522_RS05920 (KU522_05925) - 1219310..1220527 (-) 1218 WP_000270129.1 tyrosine-type recombinase/integrase -
  KU522_RS05925 (KU522_05930) - 1220790..1221515 (-) 726 WP_000668215.1 helix-turn-helix domain-containing protein -
  KU522_RS05930 (KU522_05935) - 1221687..1221899 (+) 213 WP_001245562.1 helix-turn-helix domain-containing protein -
  KU522_RS05935 (KU522_05940) - 1221900..1222172 (+) 273 WP_001138300.1 helix-turn-helix domain-containing protein -
  KU522_RS05940 (KU522_05945) - 1222184..1222339 (+) 156 WP_000784886.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=584438 KU522_RS05905 WP_000934799.1 1217018..1217521(+) (ssbA) [Staphylococcus aureus strain 357]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=584438 KU522_RS05905 WP_000934799.1 1217018..1217521(+) (ssbA) [Staphylococcus aureus strain 357]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365