Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | KU500_RS13590 | Genome accession | NZ_CP077867 |
| Coordinates | 2771231..2771701 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934770.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain 367 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2757087..2786334 | 2771231..2771701 | within | 0 |
Gene organization within MGE regions
Location: 2757087..2786334
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KU500_RS13470 (KU500_13430) | pxpA | 2757087..2757839 (+) | 753 | WP_001261799.1 | 5-oxoprolinase subunit PxpA | - |
| KU500_RS13475 (KU500_13435) | - | 2757903..2758940 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| KU500_RS13480 (KU500_13440) | - | 2759113..2759652 (-) | 540 | WP_000391618.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| KU500_RS13485 | - | 2759792..2759863 (-) | 72 | Protein_2619 | hypothetical protein | - |
| KU500_RS13490 (KU500_13445) | istA | 2759944..2761236 (+) | 1293 | WP_000777467.1 | IS21 family transposase | - |
| KU500_RS13495 (KU500_13450) | istB | 2761229..2761990 (+) | 762 | WP_001066124.1 | IS21-like element helper ATPase IstB | - |
| KU500_RS13500 (KU500_13455) | - | 2762050..2762166 (-) | 117 | Protein_2622 | hypothetical protein | - |
| KU500_RS13505 (KU500_13460) | - | 2762366..2762551 (-) | 186 | WP_001089804.1 | hypothetical protein | - |
| KU500_RS13510 (KU500_13465) | - | 2762538..2762693 (-) | 156 | WP_001049399.1 | hypothetical protein | - |
| KU500_RS13515 (KU500_13470) | - | 2762705..2763412 (-) | 708 | WP_000094093.1 | helix-turn-helix domain-containing protein | - |
| KU500_RS13520 (KU500_13475) | - | 2763583..2763822 (+) | 240 | WP_000548578.1 | helix-turn-helix transcriptional regulator | - |
| KU500_RS13525 (KU500_13480) | - | 2763835..2764095 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| KU500_RS13530 (KU500_13485) | - | 2764119..2764658 (-) | 540 | WP_000351243.1 | hypothetical protein | - |
| KU500_RS13535 (KU500_13490) | - | 2764715..2765467 (+) | 753 | WP_225805747.1 | phage antirepressor KilAC domain-containing protein | - |
| KU500_RS13540 (KU500_13495) | - | 2765484..2765678 (+) | 195 | WP_000388066.1 | hypothetical protein | - |
| KU500_RS13545 (KU500_13500) | - | 2765709..2765849 (+) | 141 | WP_000939496.1 | hypothetical protein | - |
| KU500_RS13550 (KU500_13505) | - | 2765864..2766496 (-) | 633 | WP_000275058.1 | hypothetical protein | - |
| KU500_RS13555 (KU500_13510) | - | 2766555..2766875 (+) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| KU500_RS13560 (KU500_13515) | - | 2766872..2767033 (+) | 162 | WP_000066020.1 | DUF1270 domain-containing protein | - |
| KU500_RS13565 (KU500_13520) | - | 2767126..2767386 (+) | 261 | WP_000291489.1 | DUF1108 family protein | - |
| KU500_RS13570 (KU500_13525) | - | 2767395..2767658 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| KU500_RS13575 (KU500_13530) | - | 2767667..2769610 (+) | 1944 | WP_000700562.1 | AAA family ATPase | - |
| KU500_RS13580 (KU500_13535) | - | 2769612..2770532 (+) | 921 | WP_000138481.1 | recombinase RecT | - |
| KU500_RS13585 (KU500_13540) | - | 2770613..2771230 (+) | 618 | WP_071621397.1 | MBL fold metallo-hydrolase | - |
| KU500_RS13590 (KU500_13545) | ssbA | 2771231..2771701 (+) | 471 | WP_000934770.1 | single-stranded DNA-binding protein | Machinery gene |
| KU500_RS13595 (KU500_13550) | - | 2771731..2772615 (+) | 885 | WP_000148301.1 | DnaD domain protein | - |
| KU500_RS13600 (KU500_13555) | - | 2772622..2772840 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| KU500_RS13605 (KU500_13560) | - | 2772849..2773253 (+) | 405 | WP_000401964.1 | RusA family crossover junction endodeoxyribonuclease | - |
| KU500_RS13610 (KU500_13565) | - | 2773266..2773634 (+) | 369 | WP_000101274.1 | SA1788 family PVL leukocidin-associated protein | - |
| KU500_RS13615 (KU500_13570) | - | 2773638..2773880 (+) | 243 | WP_000131366.1 | SAV1978 family virulence-associated passenger protein | - |
| KU500_RS13620 (KU500_13575) | - | 2773945..2774394 (+) | 450 | WP_000982711.1 | YopX family protein | - |
| KU500_RS13625 (KU500_13580) | - | 2774391..2774900 (+) | 510 | WP_001105598.1 | hypothetical protein | - |
| KU500_RS13630 (KU500_13585) | - | 2774897..2775307 (+) | 411 | WP_000197968.1 | hypothetical protein | - |
| KU500_RS13635 | - | 2775300..2775425 (+) | 126 | Protein_2649 | DUF1024 family protein | - |
| KU500_RS13640 (KU500_13595) | - | 2775781..2776317 (+) | 537 | WP_001066444.1 | dUTPase | - |
| KU500_RS13645 (KU500_13600) | - | 2776354..2776560 (+) | 207 | WP_000195820.1 | DUF1381 domain-containing protein | - |
| KU500_RS13650 (KU500_13605) | rinB | 2776557..2776706 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| KU500_RS13655 (KU500_13610) | - | 2776706..2776906 (+) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| KU500_RS13660 (KU500_13615) | - | 2776934..2777350 (+) | 417 | WP_000590126.1 | hypothetical protein | - |
| KU500_RS13665 (KU500_13620) | - | 2777582..2777881 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
| KU500_RS13670 (KU500_13625) | - | 2778011..2778355 (+) | 345 | WP_000402904.1 | hypothetical protein | - |
| KU500_RS13675 (KU500_13630) | - | 2778352..2780013 (+) | 1662 | WP_000625088.1 | terminase large subunit | - |
| KU500_RS13680 (KU500_13635) | - | 2780029..2781216 (+) | 1188 | WP_000025274.1 | phage portal protein | - |
| KU500_RS13685 (KU500_13640) | - | 2781200..2781937 (+) | 738 | WP_000861914.1 | head maturation protease, ClpP-related | - |
| KU500_RS13690 (KU500_13645) | - | 2781961..2783106 (+) | 1146 | WP_000154555.1 | phage major capsid protein | - |
| KU500_RS13695 (KU500_13650) | - | 2783126..2783410 (+) | 285 | WP_000238236.1 | hypothetical protein | - |
| KU500_RS13700 (KU500_13655) | - | 2783400..2783684 (+) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| KU500_RS13705 (KU500_13660) | - | 2783668..2784030 (+) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| KU500_RS13710 (KU500_13665) | - | 2784027..2784431 (+) | 405 | WP_000114225.1 | HK97 gp10 family phage protein | - |
| KU500_RS13715 (KU500_13670) | - | 2784428..2784835 (+) | 408 | WP_000565498.1 | hypothetical protein | - |
| KU500_RS13720 (KU500_13675) | - | 2784836..2785480 (+) | 645 | WP_000268741.1 | major tail protein | - |
| KU500_RS13725 (KU500_13680) | - | 2785534..2785746 (+) | 213 | WP_230402383.1 | Ig-like domain-containing protein | - |
| KU500_RS13730 (KU500_13685) | gpG | 2785796..2786146 (+) | 351 | WP_001096355.1 | phage tail assembly chaperone G | - |
| KU500_RS13735 (KU500_13690) | gpGT | 2786197..2786334 (+) | 138 | WP_001549167.1 | phage tail assembly chaperone GT | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17713.63 Da Isoelectric Point: 5.2672
>NTDB_id=584255 KU500_RS13590 WP_000934770.1 2771231..2771701(+) (ssbA) [Staphylococcus aureus strain 367]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=584255 KU500_RS13590 WP_000934770.1 2771231..2771701(+) (ssbA) [Staphylococcus aureus strain 367]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |