Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   MW405_RS21435 Genome accession   NZ_CP095518
Coordinates   4536506..4537516 (+) Length   336 a.a.
NCBI ID   WP_000568519.1    Uniprot ID   Q32HA1
Organism   Escherichia coli strain GN02350     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4531506..4542516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW405_RS21405 (MW405_21405) nudB 4533227..4533679 (+) 453 WP_077393227.1 dihydroneopterin triphosphate diphosphatase -
  MW405_RS21410 (MW405_21410) yebC 4533708..4534448 (+) 741 WP_000907234.1 YebC/PmpR family DNA-binding transcriptional regulator -
  MW405_RS21415 (MW405_21415) ruvC 4534483..4535004 (+) 522 WP_001295503.1 crossover junction endodeoxyribonuclease RuvC -
  MW405_RS21420 (MW405_21420) yebB 4535006..4535608 (-) 603 WP_001024938.1 YebB family permuted papain-like enzyme -
  MW405_RS21425 (MW405_21425) yobI 4535682..4535747 (+) 66 WP_072123646.1 stress response small protein YobI -
  MW405_RS21430 (MW405_21430) ruvA 4535886..4536497 (+) 612 WP_000580323.1 Holliday junction branch migration protein RuvA -
  MW405_RS21435 (MW405_21435) ruvB 4536506..4537516 (+) 1011 WP_000568519.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  MW405_RS21440 (MW405_21440) znuB 4537661..4538446 (-) 786 WP_000571473.1 zinc ABC transporter permease subunit ZnuB -
  MW405_RS21445 (MW405_21445) znuC 4538443..4539198 (-) 756 WP_000202996.1 zinc ABC transporter ATP-binding protein ZnuC -
  MW405_RS21450 (MW405_21450) znuA 4539277..4540209 (+) 933 WP_001347089.1 zinc ABC transporter substrate-binding protein ZnuA -
  MW405_RS21455 (MW405_21455) mepM 4540225..4541547 (+) 1323 WP_001184045.1 murein DD-endopeptidase MepM -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37173.77 Da        Isoelectric Point: 4.7818

>NTDB_id=583553 MW405_RS21435 WP_000568519.1 4536506..4537516(+) (ruvB) [Escherichia coli strain GN02350]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=583553 MW405_RS21435 WP_000568519.1 4536506..4537516(+) (ruvB) [Escherichia coli strain GN02350]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTATTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAATATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCAATGCTCACTAACCTTGAACCACA
CGATGTACTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

60.486

97.917

0.592
  ruvB Streptococcus pneumoniae TIGR4

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae R6

58.934

94.94

0.56
  ruvB Streptococcus pneumoniae D39

58.934

94.94

0.56
  ruvB Synechocystis sp. PCC 6803

53.251

96.131

0.512
  ruvB Helicobacter pylori 26695

52.038

94.94

0.494