Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MW405_RS08235 Genome accession   NZ_CP095518
Coordinates   1736487..1737023 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain GN02350     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1731487..1742023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MW405_RS08215 (MW405_08220) soxR 1733216..1733680 (-) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -
  MW405_RS08220 (MW405_08225) soxS 1733766..1734089 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  MW405_RS08225 (MW405_08230) pdeC 1734125..1735678 (-) 1554 WP_001468319.1 c-di-GMP phosphodiesterase PdeC -
  MW405_RS08230 (MW405_08235) yjcB 1736107..1736388 (+) 282 WP_001298294.1 YjcB family protein -
  MW405_RS08235 (MW405_08240) ssb 1736487..1737023 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MW405_RS08240 (MW405_08245) uvrA 1737278..1740100 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  MW405_RS08245 (MW405_08250) yjbR 1740135..1740491 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  MW405_RS08250 (MW405_08255) yjbQ 1740495..1740911 (-) 417 WP_000270369.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MW405_RS08255 (MW405_08260) aphA 1741022..1741735 (-) 714 WP_020231424.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=583490 MW405_RS08235 WP_000168305.1 1736487..1737023(-) (ssb) [Escherichia coli strain GN02350]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=583490 MW405_RS08235 WP_000168305.1 1736487..1737023(-) (ssb) [Escherichia coli strain GN02350]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTATACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489