Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LNL76_RS13100 Genome accession   NZ_CP095161
Coordinates   2628385..2628900 (+) Length   171 a.a.
NCBI ID   WP_017805689.1    Uniprot ID   A0A0F5F0Y4
Organism   Avibacterium paragallinarum strain ZJ-C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2623385..2633900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNL76_RS13090 - 2624187..2625233 (-) 1047 WP_017805687.1 rod shape-determining protein -
  LNL76_RS13095 uvrA 2625379..2628207 (-) 2829 WP_194743012.1 excinuclease ABC subunit UvrA Machinery gene
  LNL76_RS13100 ssb 2628385..2628900 (+) 516 WP_017805689.1 single-stranded DNA-binding protein Machinery gene
  LNL76_RS13105 - 2629063..2630136 (-) 1074 WP_110479356.1 alpha/beta hydrolase -
  LNL76_RS13110 - 2630519..2631844 (+) 1326 WP_110479355.1 AAA family ATPase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19127.00 Da        Isoelectric Point: 5.0012

>NTDB_id=582697 LNL76_RS13100 WP_017805689.1 2628385..2628900(+) (ssb) [Avibacterium paragallinarum strain ZJ-C]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWMDKNTGERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRGQGGYSAQGGYAQQGSNQYAQPAQPSYQAPQQQAAARPSSPPTPMV
DDNFDDDNIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=582697 LNL76_RS13100 WP_017805689.1 2628385..2628900(+) (ssb) [Avibacterium paragallinarum strain ZJ-C]
ATGGCTGGAGTAAATAAAGTTATTATTGTTGGAAATCTAGGAAATGATCCGGAAATTCGTACAATGCCAAATGGGGAAGC
CGTTGCGAACATTAGTGTTGCGACCAGTGAAAGCTGGATGGATAAAAATACGGGAGAACGCCGTGAAATTACCGAATGGC
ATCGTATTGTGTTTTATCGTCGCCAAGCAGAAGTCGCTGGCGAATATTTACGCAAAGGCTCAAAAGTTTATGTTGAAGGG
CGTTTAAGAACTCGCAAATGGCAAGATCAAAATGGCCAAGATCGTTATACAACAGAAATTCAAGGCGATGTTTTGCAAAT
GTTAGATAGCCGTGCAGATAGAGGACAAGGTGGGTATTCAGCTCAAGGGGGATATGCTCAACAAGGCAGCAACCAATATG
CACAACCCGCACAACCGAGCTATCAAGCCCCTCAACAACAGGCAGCAGCCCGCCCTTCATCACCACCTACTCCTATGGTT
GATGATAATTTTGATGACGATAATATCCCATTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5F0Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

68.132

100

0.725
  ssb Vibrio cholerae strain A1552

60.221

100

0.637
  ssb Neisseria meningitidis MC58

48

100

0.491
  ssb Neisseria gonorrhoeae MS11

48

100

0.491