Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KSF84_RS07125 Genome accession   NZ_CP077723
Coordinates   1526303..1526803 (+) Length   166 a.a.
NCBI ID   WP_005725039.1    Uniprot ID   A0A379BD60
Organism   Pasteurella multocida strain PMWSG-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1521303..1531803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSF84_RS07110 (KSF84_07110) rlmB 1521846..1522583 (+) 738 WP_005725044.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  KSF84_RS07115 (KSF84_07115) sodC 1522669..1523229 (-) 561 WP_005725042.1 superoxide dismutase family protein -
  KSF84_RS07120 (KSF84_07120) uvrA 1523300..1526131 (-) 2832 WP_061406255.1 excinuclease ABC subunit UvrA -
  KSF84_RS07125 (KSF84_07125) ssb 1526303..1526803 (+) 501 WP_005725039.1 single-stranded DNA-binding protein Machinery gene
  KSF84_RS07130 (KSF84_07130) folD 1527311..1528165 (-) 855 WP_005725034.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  KSF84_RS07145 (KSF84_07145) - 1528808..1529227 (+) 420 WP_005719426.1 DUF417 family protein -
  KSF84_RS07150 (KSF84_07150) lipA 1529305..1530267 (-) 963 WP_005725033.1 lipoyl synthase -
  KSF84_RS07155 (KSF84_07155) lipB 1530332..1530988 (-) 657 WP_005725032.1 lipoyl(octanoyl) transferase LipB -
  KSF84_RS07160 (KSF84_07160) ybeD 1530995..1531291 (-) 297 WP_005719420.1 DUF493 family protein YbeD -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18657.68 Da        Isoelectric Point: 5.3353

>NTDB_id=582511 KSF84_RS07125 WP_005725039.1 1526303..1526803(+) (ssb) [Pasteurella multocida strain PMWSG-4]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGYAPQTAAPQYNAPTGGYGAQPSRPATKPAPQNEPPMDMGFE
EDNIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=582511 KSF84_RS07125 WP_005725039.1 1526303..1526803(+) (ssb) [Pasteurella multocida strain PMWSG-4]
ATGGCTGGAGTAAATAAAGTAATTATTGTAGGGAACTTAGGTAACGATCCTGAAATCCGCACAATGCCAAATGGTGAAGC
CGTAGCCAATATCAGCGTCGCGACCAGTGAAAGCTGGATCGACAAAAATACTAACGAACGTCGTGAAGTCACCGAATGGC
ATCGCATCGTATTCTACCGTCGCCAAGCTGAAGTGGCTGGGGAATATCTGCGTAAAGGTTCAAAAGTGTATGTAGAAGGA
CGCCTAAAAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGCTACACTACCGAAATCCAAGGCGACGTGTTACAAAT
GCTCGACAGCCGTAACGAACGTCAACAAACCGGCGGCTACGCCCCACAAACCGCTGCGCCACAATATAATGCCCCAACAG
GTGGCTACGGTGCACAACCTTCTCGTCCAGCGACAAAACCCGCTCCACAAAACGAACCTCCAATGGACATGGGCTTTGAG
GAAGATAATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A379BD60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

69.231

100

0.759
  ssb Vibrio cholerae strain A1552

53.591

100

0.584
  ssb Neisseria meningitidis MC58

44.068

100

0.47
  ssb Neisseria gonorrhoeae MS11

44.068

100

0.47