Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KSF84_RS03700 Genome accession   NZ_CP077723
Coordinates   762443..762895 (+) Length   150 a.a.
NCBI ID   WP_064702813.1    Uniprot ID   -
Organism   Pasteurella multocida strain PMWSG-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 757443..767895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSF84_RS03665 (KSF84_03665) - 757794..758696 (+) 903 WP_061406091.1 hypothetical protein -
  KSF84_RS03670 (KSF84_03670) - 759140..759367 (+) 228 WP_064702807.1 hypothetical protein -
  KSF84_RS03675 (KSF84_03675) - 759515..760156 (+) 642 WP_064702808.1 DUF3560 domain-containing protein -
  KSF84_RS03680 (KSF84_03680) - 760201..760482 (+) 282 WP_064702809.1 hypothetical protein -
  KSF84_RS03685 (KSF84_03685) - 760659..760871 (+) 213 WP_064702810.1 hypothetical protein -
  KSF84_RS03690 (KSF84_03690) - 761044..761688 (+) 645 WP_064702811.1 ribonuclease H-like domain-containing protein -
  KSF84_RS03695 (KSF84_03695) - 761731..762432 (+) 702 WP_064702812.1 ERF family protein -
  KSF84_RS03700 (KSF84_03700) ssb 762443..762895 (+) 453 WP_064702813.1 single-stranded DNA-binding protein Machinery gene
  KSF84_RS03705 (KSF84_03705) - 762906..763103 (+) 198 WP_064702814.1 hypothetical protein -
  KSF84_RS03710 (KSF84_03710) - 763354..764259 (+) 906 WP_064702815.1 SPFH domain-containing protein -
  KSF84_RS03715 (KSF84_03715) - 764309..764572 (+) 264 WP_064702816.1 hypothetical protein -
  KSF84_RS03720 (KSF84_03720) - 764603..765277 (+) 675 WP_064702817.1 hypothetical protein -
  KSF84_RS03725 (KSF84_03725) - 765264..765602 (+) 339 WP_064702818.1 hypothetical protein -
  KSF84_RS03730 (KSF84_03730) - 765678..765887 (+) 210 WP_064702819.1 hypothetical protein -
  KSF84_RS03735 (KSF84_03735) rdgC 765918..766826 (+) 909 WP_064702820.1 recombination-associated protein RdgC -
  KSF84_RS03740 (KSF84_03740) - 766970..767446 (+) 477 WP_064702821.1 hypothetical protein -
  KSF84_RS03745 (KSF84_03745) - 767455..767688 (+) 234 WP_064702822.1 DUF551 domain-containing protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16866.74 Da        Isoelectric Point: 6.9807

>NTDB_id=582504 KSF84_RS03700 WP_064702813.1 762443..762895(+) (ssb) [Pasteurella multocida strain PMWSG-4]
MAGVNLVIILGNLGNDPDIRTMPNGEAVAKISVATSESWIDKNTGERKTQTEWHSIVFYRRQAEICGQYLKKGSKVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRQDSQPQPQAQAPQNNAYANAKSGKPAQQAYSFEDDSIPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=582504 KSF84_RS03700 WP_064702813.1 762443..762895(+) (ssb) [Pasteurella multocida strain PMWSG-4]
ATGGCTGGGGTTAATCTTGTAATTATTTTAGGAAATTTAGGAAACGATCCTGATATCCGCACAATGCCAAATGGCGAAGC
AGTGGCAAAAATCAGCGTCGCAACTAGTGAAAGCTGGATTGATAAAAACACTGGCGAGCGCAAAACACAAACAGAATGGC
ACTCTATTGTGTTCTACCGTCGCCAAGCAGAAATTTGCGGTCAGTATCTCAAAAAAGGATCGAAAGTGTATGTGGAAGGG
CGTTTAAAAACTCGTAAGTGGCAAGACCAAAACGGGCAAGATCGCTACACAACTGAAATCCAAGGTGACGTATTGCAGAT
GTTAGACAGTCGCCAAGATTCGCAACCGCAACCGCAAGCACAGGCACCACAAAACAACGCTTATGCGAATGCGAAAAGTG
GAAAGCCAGCGCAACAGGCTTATAGTTTTGAAGATGATAGCATACCTTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

61.878

100

0.747
  ssb Vibrio cholerae strain A1552

53.521

94.667

0.507
  ssb Neisseria gonorrhoeae MS11

46.763

92.667

0.433
  ssb Neisseria meningitidis MC58

46.763

92.667

0.433