Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MU416_RS20600 Genome accession   NZ_CP095125
Coordinates   4262978..4263514 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain Iso00270     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4257978..4268514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU416_RS20580 soxR 4259706..4260170 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  MU416_RS20585 soxS 4260256..4260579 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  MU416_RS20590 pdeC 4260582..4262168 (-) 1587 WP_245112069.1 c-di-GMP phosphodiesterase PdeC -
  MU416_RS20595 yjcB 4262598..4262879 (+) 282 WP_001295689.1 YjcB family protein -
  MU416_RS20600 ssb 4262978..4263514 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MU416_RS20605 uvrA 4263768..4266590 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  MU416_RS20610 yjbR 4266625..4266981 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  MU416_RS20615 yjbQ 4266985..4267401 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MU416_RS20620 aphA 4267512..4268225 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=582460 MU416_RS20600 WP_000168305.1 4262978..4263514(-) (ssb) [Escherichia coli strain Iso00270]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=582460 MU416_RS20600 WP_000168305.1 4262978..4263514(-) (ssb) [Escherichia coli strain Iso00270]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489