Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KTT68_RS19230 Genome accession   NZ_CP077672
Coordinates   3909909..3910427 (-) Length   172 a.a.
NCBI ID   WP_007615071.1    Uniprot ID   -
Organism   Bacillus velezensis strain SWUJ1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3904909..3915427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTT68_RS19200 - 3906110..3906490 (-) 381 WP_032875338.1 VOC family protein -
  KTT68_RS19205 - 3906547..3907485 (-) 939 WP_224223950.1 LacI family DNA-binding transcriptional regulator -
  KTT68_RS19210 xth 3907548..3908306 (-) 759 WP_224223951.1 exodeoxyribonuclease III -
  KTT68_RS19215 - 3908303..3908860 (-) 558 WP_224223952.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  KTT68_RS19220 - 3908857..3909438 (-) 582 WP_224223953.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  KTT68_RS19225 rpsR 3909626..3909865 (-) 240 WP_029325793.1 30S ribosomal protein S18 -
  KTT68_RS19230 ssbA 3909909..3910427 (-) 519 WP_007615071.1 single-stranded DNA-binding protein SsbA Machinery gene
  KTT68_RS19235 rpsF 3910467..3910754 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  KTT68_RS19240 ychF 3910866..3911966 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  KTT68_RS19245 - 3912093..3914096 (-) 2004 WP_224223954.1 molybdopterin-dependent oxidoreductase -
  KTT68_RS19250 - 3914143..3914349 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18772.33 Da        Isoelectric Point: 4.7621

>NTDB_id=582111 KTT68_RS19230 WP_007615071.1 3909909..3910427(-) (ssbA) [Bacillus velezensis strain SWUJ1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNNGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=582111 KTT68_RS19230 WP_007615071.1 3909909..3910427(-) (ssbA) [Bacillus velezensis strain SWUJ1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAACGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

34.973

100

0.372