Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   KTT68_RS11720 Genome accession   NZ_CP077672
Coordinates   2444575..2445012 (-) Length   145 a.a.
NCBI ID   WP_007408322.1    Uniprot ID   -
Organism   Bacillus velezensis strain SWUJ1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2439575..2450012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTT68_RS11670 sinI 2439959..2440132 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  KTT68_RS11675 sinR 2440166..2440501 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  KTT68_RS11680 tasA 2440549..2441334 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  KTT68_RS11685 sipW 2441399..2441983 (-) 585 WP_007408328.1 signal peptidase I SipW -
  KTT68_RS11690 tapA 2441955..2442626 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  KTT68_RS11695 - 2442885..2443214 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  KTT68_RS11700 - 2443254..2443433 (-) 180 WP_003153093.1 YqzE family protein -
  KTT68_RS11705 comGG 2443490..2443867 (-) 378 WP_039063315.1 competence type IV pilus minor pilin ComGG -
  KTT68_RS11710 comGF 2443868..2444368 (-) 501 WP_258038902.1 competence type IV pilus minor pilin ComGF -
  KTT68_RS11715 comGE 2444277..2444591 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  KTT68_RS11720 comGD 2444575..2445012 (-) 438 WP_007408322.1 competence type IV pilus minor pilin ComGD Machinery gene
  KTT68_RS11725 comGC 2445002..2445310 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  KTT68_RS11730 comGB 2445315..2446352 (-) 1038 WP_032866436.1 competence type IV pilus assembly protein ComGB Machinery gene
  KTT68_RS11735 comGA 2446339..2447409 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  KTT68_RS11740 - 2447601..2448551 (-) 951 WP_015417820.1 magnesium transporter CorA family protein -
  KTT68_RS11745 - 2448697..2449998 (+) 1302 WP_039063318.1 hemolysin family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16314.79 Da        Isoelectric Point: 10.2475

>NTDB_id=582080 KTT68_RS11720 WP_007408322.1 2444575..2445012(-) (comGD) [Bacillus velezensis strain SWUJ1]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVYTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPKEHKYK
LQSGGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIQLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=582080 KTT68_RS11720 WP_007408322.1 2444575..2445012(-) (comGD) [Bacillus velezensis strain SWUJ1]
TTGAACAATAACAGGCGGACAGAAAATGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTACACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTCCAAAAAGATA
TTCAGCTTGCTCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAAAGAGCATAAATACAAA
CTGCAGTCAGGCGGAAGGATTGTCGAGCGTTCTTTTGACTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCAATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

56.164

100

0.566