Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KTT68_RS11675 Genome accession   NZ_CP077672
Coordinates   2440166..2440501 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain SWUJ1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2435166..2445501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTT68_RS11655 gcvT 2435772..2436872 (-) 1101 WP_045208234.1 glycine cleavage system aminomethyltransferase GcvT -
  KTT68_RS11660 - 2437296..2438966 (+) 1671 WP_224223673.1 DEAD/DEAH box helicase -
  KTT68_RS11665 - 2438988..2439782 (+) 795 WP_007408330.1 YqhG family protein -
  KTT68_RS11670 sinI 2439959..2440132 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  KTT68_RS11675 sinR 2440166..2440501 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  KTT68_RS11680 tasA 2440549..2441334 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  KTT68_RS11685 sipW 2441399..2441983 (-) 585 WP_007408328.1 signal peptidase I SipW -
  KTT68_RS11690 tapA 2441955..2442626 (-) 672 WP_020954230.1 amyloid fiber anchoring/assembly protein TapA -
  KTT68_RS11695 - 2442885..2443214 (+) 330 WP_020954231.1 DUF3889 domain-containing protein -
  KTT68_RS11700 - 2443254..2443433 (-) 180 WP_003153093.1 YqzE family protein -
  KTT68_RS11705 comGG 2443490..2443867 (-) 378 WP_039063315.1 competence type IV pilus minor pilin ComGG -
  KTT68_RS11710 comGF 2443868..2444368 (-) 501 WP_258038902.1 competence type IV pilus minor pilin ComGF -
  KTT68_RS11715 comGE 2444277..2444591 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  KTT68_RS11720 comGD 2444575..2445012 (-) 438 WP_007408322.1 competence type IV pilus minor pilin ComGD Machinery gene
  KTT68_RS11725 comGC 2445002..2445310 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=582079 KTT68_RS11675 WP_003153104.1 2440166..2440501(+) (sinR) [Bacillus velezensis strain SWUJ1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=582079 KTT68_RS11675 WP_003153104.1 2440166..2440501(+) (sinR) [Bacillus velezensis strain SWUJ1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991