Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   MP619_RS11620 Genome accession   NZ_CP095081
Coordinates   1822944..1823609 (-) Length   221 a.a.
NCBI ID   WP_129556117.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain WJ001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1817944..1828609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP619_RS09140 (MP619_09110) - 1821197..1822219 (+) 1023 WP_129555386.1 IS30 family transposase -
  MP619_RS09145 (MP619_09115) raiA 1822316..1822864 (-) 549 WP_003061817.1 ribosome-associated translation inhibitor RaiA -
  MP619_RS11620 comFC/cflB 1822944..1823609 (-) 666 WP_129556117.1 ComF family protein Machinery gene
  MP619_RS09155 (MP619_09125) - 1823581..1824905 (-) 1325 Protein_1748 DEAD/DEAH box helicase -
  MP619_RS09160 (MP619_09130) - 1824961..1825602 (+) 642 WP_129556118.1 YigZ family protein -
  MP619_RS09165 (MP619_09135) cysK 1825703..1826638 (+) 936 WP_129556119.1 cysteine synthase A -
  MP619_RS09170 (MP619_09140) - 1826791..1827150 (-) 360 WP_129556120.1 S1 RNA-binding domain-containing protein -
  MP619_RS09175 (MP619_09145) - 1827150..1828550 (-) 1401 WP_129556121.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25411.45 Da        Isoelectric Point: 8.8600

>NTDB_id=581891 MP619_RS11620 WP_129556117.1 1822944..1823609(-) (comFC/cflB) [Streptococcus dysgalactiae strain WJ001]
MICLLCQRFSPLPLRITDILFLKPQTATLCQECQQGFQKISFTSCQTCNAPSQSSPCSDCLEWKVKGYEVNHRSLYQYNA
AMKAYFSQYKFQGDYLLRHIFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGSINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTFSELPAKILIIDDIYTTGSTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=581891 MP619_RS11620 WP_129556117.1 1822944..1823609(-) (comFC/cflB) [Streptococcus dysgalactiae strain WJ001]
ATGATATGCCTCCTATGTCAACGATTTAGTCCATTACCCTTGCGAATAACAGATATTCTCTTTTTGAAACCTCAAACAGC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGATAAGCTTCACGAGTTGCCAAACCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGAAAGTCAAAGGATACGAGGTTAATCACAGAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATATCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAGTATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTACCGTCTCTCCACCTTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAGCACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412
  comFC/cflB Streptococcus mitis SK321

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae TIGR4

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae Rx1

39.819

100

0.398
  comFC/cflB Streptococcus pneumoniae D39

39.819

100

0.398
  comFC/cflB Streptococcus pneumoniae R6

39.819

100

0.398