Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   MP619_RS03665 Genome accession   NZ_CP095081
Coordinates   699839..700801 (+) Length   320 a.a.
NCBI ID   WP_129555468.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain WJ001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 694839..705801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP619_RS03645 (MP619_03630) queA 695715..696743 (-) 1029 WP_129555464.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  MP619_RS03650 (MP619_03635) nagB 696942..697655 (+) 714 WP_129555465.1 glucosamine-6-phosphate deaminase -
  MP619_RS03655 (MP619_03640) - 697759..698475 (+) 717 WP_129555466.1 pseudouridine synthase -
  MP619_RS03660 (MP619_03645) - 698567..699727 (+) 1161 WP_129555467.1 MFS transporter -
  MP619_RS03665 (MP619_03650) coiA 699839..700801 (+) 963 WP_129555468.1 competence protein CoiA family protein Machinery gene
  MP619_RS03670 (MP619_03655) pepF 700812..702614 (+) 1803 WP_129555469.1 oligoendopeptidase F Regulator
  MP619_RS03675 (MP619_03660) - 702801..703355 (+) 555 WP_129555470.1 NADPH-dependent FMN reductase -
  MP619_RS03680 (MP619_03665) - 703478..704020 (+) 543 WP_129555471.1 GNAT family N-acetyltransferase -
  MP619_RS03685 (MP619_03670) - 704020..704643 (+) 624 WP_129555472.1 HAD-IA family hydrolase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37682.14 Da        Isoelectric Point: 10.2720

>NTDB_id=581828 MP619_RS03665 WP_129555468.1 699839..700801(+) (coiA) [Streptococcus dysgalactiae strain WJ001]
MLRVLTALTNENQVISLLAQPNPQKQPFRCPACGSPVRLRQGKIIRPHFAHITLANCHFQTENESQEHLHLKAKIYTSLI
KTEKVCVEKYLPELQQFPDLWVNDKLALEIQCSPIPIERLVARTQAYQKHGYEVRWLLGKKLWLKNRLTAFQKQCLYFSS
RLGFHLWELDTAAHLLRLKYLIHEDLFGKVSYLTKTISLDNNIMESLRIPYHQRKLCSYQKPMAKSLSIPIQRALLAKHP
KWLRRQERAYLAGYNLLMLPVEAFYPQWRPVQSATGFCQIKENLHDYNKSFKAYYKKEGNKKVQTLFSPQYYVKIVSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=581828 MP619_RS03665 WP_129555468.1 699839..700801(+) (coiA) [Streptococcus dysgalactiae strain WJ001]
GTGTTGAGAGTATTAACAGCTTTAACCAATGAGAATCAGGTGATTTCTTTGCTAGCACAGCCTAATCCTCAGAAGCAACC
ATTTCGTTGTCCAGCTTGCGGATCTCCTGTTCGCTTGCGTCAGGGAAAAATTATACGCCCTCATTTTGCACACATCACAT
TAGCTAATTGTCATTTTCAAACAGAAAATGAGTCCCAAGAACATTTGCATTTGAAAGCAAAAATATACACAAGTCTGATA
AAGACAGAAAAGGTTTGTGTGGAAAAGTATCTTCCCGAGTTACAACAATTTCCAGATCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGCCCTATACCAATTGAGCGTTTGGTGGCACGTACACAAGCCTATCAGAAACATGGTTACGAGG
TTCGTTGGCTGTTGGGAAAGAAACTCTGGCTTAAAAATCGTTTAACGGCCTTCCAAAAACAATGTCTTTACTTCTCATCT
CGTTTAGGCTTTCATTTATGGGAGTTGGATACAGCTGCACATCTGTTGCGTTTAAAATACTTAATTCATGAAGATTTATT
TGGCAAAGTGAGTTACCTAACCAAAACCATTTCTTTGGATAACAATATCATGGAAAGTTTGCGGATTCCTTATCACCAAA
GGAAGCTCTGTTCTTACCAAAAACCTATGGCCAAGTCTCTTTCGATACCCATTCAAAGGGCTTTATTAGCGAAGCACCCT
AAATGGTTACGTCGTCAGGAAAGAGCCTATTTAGCTGGCTATAATTTACTCATGTTGCCAGTAGAGGCCTTCTATCCTCA
ATGGCGCCCCGTACAGTCGGCTACTGGTTTTTGTCAAATCAAAGAGAATCTCCATGATTATAATAAGAGTTTTAAAGCTT
ATTACAAAAAAGAAGGGAATAAGAAGGTGCAAACGCTTTTTTCACCTCAATATTATGTTAAAATAGTTAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

42.903

96.875

0.416
  coiA Streptococcus pneumoniae Rx1

41.29

96.875

0.4
  coiA Streptococcus pneumoniae D39

41.29

96.875

0.4
  coiA Streptococcus pneumoniae R6

41.29

96.875

0.4
  coiA Streptococcus pneumoniae TIGR4

41.29

96.875

0.4
  coiA Lactococcus lactis subsp. cremoris KW2

38.344

100

0.391