Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD3   Type   Regulator
Locus tag   JGX27_RS10080 Genome accession   NZ_CP077423
Coordinates   2009112..2010476 (-) Length   454 a.a.
NCBI ID   WP_009854992.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 2004112..2015476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS10050 (JGX27_10050) - 2004422..2005051 (-) 630 WP_009854988.1 thiamine diphosphokinase -
  JGX27_RS10055 (JGX27_10055) rpe 2005044..2005706 (-) 663 WP_009854989.1 ribulose-phosphate 3-epimerase -
  JGX27_RS10060 (JGX27_10060) rsgA 2005713..2006585 (-) 873 WP_009854990.1 ribosome small subunit-dependent GTPase A -
  JGX27_RS10075 (JGX27_10075) - 2008780..2008980 (-) 201 WP_009854991.1 hypothetical protein -
  JGX27_RS10080 (JGX27_10080) comD/comD3 2009112..2010476 (-) 1365 WP_009854992.1 GHKL domain-containing protein Regulator
  JGX27_RS10085 (JGX27_10085) comE/comE2 2010489..2011217 (-) 729 WP_012962512.1 LytTR family DNA-binding domain-containing protein Regulator
  JGX27_RS10090 (JGX27_10090) - 2011316..2011609 (-) 294 WP_009854994.1 bacteriocin immunity protein -
  JGX27_RS10095 (JGX27_10095) - 2011660..2011887 (-) 228 WP_009854995.1 hypothetical protein -
  JGX27_RS10100 (JGX27_10100) - 2012157..2012468 (-) 312 WP_003066564.1 bacteriocin immunity protein -
  JGX27_RS10105 (JGX27_10105) - 2012480..2012629 (-) 150 WP_009854997.1 hypothetical protein -
  JGX27_RS10110 (JGX27_10110) - 2012639..2012938 (-) 300 WP_009854998.1 DUF3884 family protein -
  JGX27_RS10115 (JGX27_10115) - 2013238..2013375 (+) 138 WP_009854999.1 hypothetical protein -
  JGX27_RS10120 (JGX27_10120) - 2013397..2014704 (-) 1308 WP_009855000.1 GHKL domain-containing protein -
  JGX27_RS10125 (JGX27_10125) comE/comE1 2014712..2015443 (-) 732 WP_009855001.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 52378.70 Da        Isoelectric Point: 5.1864

>NTDB_id=581525 JGX27_RS10080 WP_009854992.1 2009112..2010476(-) (comD/comD3) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MDLRSLIAFLETFVTFLGYAILFKSITKYRLAVWEWLVSVLVLPILASGFAVVMLLCFADMDGFKTVMIKNIVVLLWFTT
LSYRHDRSLLPRYHIFYGLFPVAVEDILLRTVSYSLAALFSTRINAIGQSWIAHVDIWTPVPIYFMASKLLEIDISNVKK
TLQNYLSSTSLILINLLMAFYFFGIDYVALKSPFGSVGSESFRERVTFVYFILLFLFLFYLNYKYVREQEIELQRQQELE
LISLENYSKHVESLYQEVRSFRHDYANILLSIGESIERNDLETIKKIYNDITNDSEKLVRNSKFDLTRLSHISNSAIKSL
MSAKFLEAENLGITITLEVPEVVECPKIPLITYIRILAILFDNAIEAAVLSDVPKISVANFYQDDNFVFMIENSTKEDSI
PIDNIYQKGYSSKGDNRGIGLATVSEFQQEYDNLSIETSSSNHLFRQILRIYES

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=581525 JGX27_RS10080 WP_009854992.1 2009112..2010476(-) (comD/comD3) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
TTGGATTTAAGGAGTTTAATTGCGTTTTTAGAAACCTTTGTCACGTTTTTGGGGTATGCTATCCTATTTAAGAGCATTAC
CAAGTACCGACTTGCCGTTTGGGAATGGCTAGTATCTGTTTTAGTGTTGCCAATTCTTGCATCAGGCTTTGCGGTTGTCA
TGCTTTTATGCTTTGCGGATATGGACGGTTTCAAAACTGTCATGATTAAAAATATTGTGGTGTTGTTGTGGTTTACCACC
TTATCTTACCGTCATGATAGGTCCTTGCTACCAAGGTATCATATTTTTTATGGGCTTTTCCCAGTTGCGGTAGAGGATAT
TTTGCTTAGGACGGTGTCTTATTCATTAGCGGCGCTATTTTCCACAAGAATCAATGCTATCGGACAGTCATGGATTGCTC
ATGTTGACATCTGGACACCCGTTCCGATTTATTTTATGGCTTCAAAATTACTGGAAATTGATATTTCAAATGTCAAAAAG
ACCTTGCAAAATTACCTTAGCTCGACAAGTCTTATCTTGATTAATCTGCTAATGGCTTTCTATTTTTTTGGAATAGATTA
TGTCGCTTTGAAAAGTCCATTTGGTAGCGTAGGTAGCGAATCGTTTAGAGAAAGAGTTACTTTTGTTTACTTTATTCTTC
TTTTTCTATTTTTGTTCTATCTGAATTACAAATACGTCCGTGAACAAGAGATAGAATTACAAAGGCAGCAGGAGCTAGAA
TTAATTTCGCTGGAAAATTACAGCAAACATGTGGAAAGTTTGTACCAAGAGGTTAGAAGTTTCAGGCATGACTATGCCAA
TATTTTGTTGAGTATAGGAGAAAGTATCGAGCGAAATGACTTGGAAACTATCAAAAAAATCTACAATGACATTACTAATG
ATTCTGAGAAGCTCGTCAGAAATAGCAAATTCGATTTGACACGCTTGTCTCATATTTCAAATAGTGCCATCAAAAGTTTG
ATGTCTGCTAAATTTCTAGAGGCTGAAAATCTCGGAATCACCATTACTTTGGAAGTTCCTGAAGTCGTGGAGTGTCCCAA
AATTCCACTTATTACCTACATTCGCATCCTTGCTATCTTGTTTGATAATGCGATTGAAGCTGCGGTGTTATCAGATGTTC
CTAAAATATCCGTAGCGAATTTTTATCAAGATGATAACTTTGTTTTTATGATTGAAAATTCAACCAAAGAAGATAGTATT
CCGATTGATAATATTTATCAAAAAGGCTATTCAAGCAAAGGAGACAATCGTGGTATTGGCTTAGCAACAGTTAGTGAATT
TCAGCAAGAATATGACAATCTCTCCATTGAAACAAGCAGCTCAAATCACCTCTTTAGACAAATTTTGAGAATCTATGAAT
CCTAG

Domains

Predicted by InterproScan.

GHKL domain (HATPase_c_5)

(354-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD3 Streptococcus equinus JB1

50.328

100

0.507
  comD/comD2 Streptococcus equinus JB1

57.372

68.722

0.394