Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   JGX27_RS08150 Genome accession   NZ_CP077423
Coordinates   1619583..1620935 (-) Length   450 a.a.
NCBI ID   WP_009854645.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1614583..1625935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS08140 (JGX27_08140) rnc 1617568..1618254 (-) 687 WP_009854642.1 ribonuclease III -
  JGX27_RS11410 - 1618540..1618665 (-) 126 WP_009854643.1 hypothetical protein -
  JGX27_RS08145 (JGX27_08145) vicX 1618773..1619582 (-) 810 WP_009854644.1 MBL fold metallo-hydrolase Regulator
  JGX27_RS08150 (JGX27_08150) vicK 1619583..1620935 (-) 1353 WP_009854645.1 cell wall metabolism sensor histidine kinase VicK Regulator
  JGX27_RS08155 (JGX27_08155) vicR 1620928..1621638 (-) 711 WP_009854646.1 response regulator YycF Regulator
  JGX27_RS08160 (JGX27_08160) - 1621943..1622707 (+) 765 WP_009854647.1 amino acid ABC transporter ATP-binding protein -
  JGX27_RS08165 (JGX27_08165) - 1622718..1623530 (+) 813 WP_014620198.1 transporter substrate-binding domain-containing protein -
  JGX27_RS08170 (JGX27_08170) - 1623547..1624251 (+) 705 WP_009854649.1 amino acid ABC transporter permease -
  JGX27_RS08175 (JGX27_08175) - 1624263..1624910 (+) 648 WP_009854650.1 amino acid ABC transporter permease -
  JGX27_RS08180 (JGX27_08180) - 1625002..1625610 (-) 609 WP_009854651.1 VTT domain-containing protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 51520.54 Da        Isoelectric Point: 4.6944

>NTDB_id=581517 JGX27_RS08150 WP_009854645.1 1619583..1620935(-) (vicK) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MNDTMLQNLTYFEQAILFLLAFVAVYFVYLAIRDYRTSVNIRRLSGKVRELITGKYTEDIIIEKDRDLAELADQLNDLST
VFRLAQENLAQEKNRLASILSYMTDGVLATDRAGNITMINQTAQQQLNLEREEALQMNIVDILGSDSTYSYHDLVSKTPE
IVLNRRDETGEFITLRIRFALNRRDSGFISGLIAVLHDTTEQEKEDRERRLFVSNVSHELRTPLTSVKSYLEALDEGALK
EDIAPSFIKVSLDETNRMIRMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSILNRFDQIKSQHTISGKQYEIVRDYPIKS
IWLEIDPDKMTQVLDNILNNAIKYSPDGGKITVSMKTTETQLIISISDEGLGIPKKDLPLIFDRFYRVDKARSRAQGGSG
LGLAIAKEIVKQHKGFIWAQSTYGKGSTFTIVLPYEKDSEIYDEWEDEEE

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=581517 JGX27_RS08150 WP_009854645.1 1619583..1620935(-) (vicK) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGAATGATACAATGTTACAAAATTTAACTTATTTTGAACAAGCCATTCTCTTTCTTTTAGCATTTGTCGCAGTTTATTT
TGTTTATTTAGCGATAAGAGATTATCGAACTTCTGTTAATATTCGACGTTTGAGTGGTAAAGTGCGAGAGCTTATCACAG
GAAAATACACAGAAGATATTATTATTGAAAAAGATAGAGACTTAGCTGAGTTAGCTGACCAATTAAATGATTTGTCAACA
GTCTTTCGTTTAGCGCAGGAAAATTTGGCACAAGAAAAGAATCGTTTGGCGAGTATCTTATCTTATATGACAGACGGTGT
CTTGGCGACTGACCGTGCTGGAAATATCACAATGATTAATCAGACCGCGCAACAACAACTCAATTTAGAGCGTGAAGAAG
CTTTGCAGATGAATATTGTTGATATTTTGGGTTCTGATAGCACTTATAGTTATCATGATTTGGTGTCAAAAACACCTGAA
ATTGTCTTGAACCGTCGTGACGAAACAGGTGAATTTATCACTTTACGTATTCGCTTTGCTCTAAATCGTCGTGATAGTGG
CTTTATTTCAGGGTTGATTGCTGTTTTGCATGACACAACCGAACAAGAAAAAGAAGACCGTGAGCGTCGTCTTTTCGTTT
CTAACGTTAGTCATGAATTGCGAACACCATTAACATCTGTAAAATCTTATCTGGAAGCTTTAGATGAAGGAGCGCTCAAA
GAAGACATTGCGCCAAGTTTTATCAAAGTATCTTTAGATGAAACAAACCGCATGATTCGTATGATTTCAGACTTGCTTAA
TTTATCGCGTATTGATAATCAGACGGTTCAATTGGAAGTGGAAATGACAAATTTCACAGCATTTATGACATCAATTCTTA
ACCGTTTTGATCAAATTAAAAGCCAACATACAATCAGCGGAAAACAGTATGAGATTGTCAGGGATTATCCTATTAAATCA
ATCTGGCTTGAAATTGACCCTGATAAGATGACGCAGGTTTTGGATAATATCCTTAATAATGCTATCAAATATTCACCAGA
TGGTGGAAAAATCACAGTTAGCATGAAAACGACGGAAACACAGTTGATTATCTCAATCTCTGATGAAGGGCTTGGTATTC
CTAAGAAAGATTTGCCATTGATTTTCGACCGTTTCTATCGTGTGGATAAGGCTCGAAGTCGTGCCCAAGGTGGTTCAGGA
CTTGGCTTAGCTATCGCAAAAGAAATTGTCAAACAACATAAAGGTTTTATTTGGGCACAAAGTACTTACGGAAAAGGGTC
GACCTTTACGATTGTACTTCCTTACGAAAAAGATTCTGAAATTTATGATGAATGGGAGGATGAAGAAGAGTAG

Domains

Predicted by InterproScan.

PAS fold (PAS)

(95-189)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(326-436)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

75.663

92.222

0.698
  micB Streptococcus pneumoniae Cp1015

66.038

94.222

0.622