Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KGD87_RS32290 Genome accession   NZ_CP077414
Coordinates   7921373..7921873 (+) Length   166 a.a.
NCBI ID   WP_284664794.1    Uniprot ID   -
Organism   Myxococcus sp. SDU36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7916373..7926873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGD87_RS32270 (KGD87_32155) - 7916934..7917395 (+) 462 WP_284664790.1 PTS sugar transporter subunit IIA -
  KGD87_RS32275 (KGD87_32160) - 7917430..7918275 (+) 846 WP_284664791.1 hypothetical protein -
  KGD87_RS32280 (KGD87_32165) dtd 7918272..7918733 (-) 462 WP_284664792.1 D-aminoacyl-tRNA deacylase -
  KGD87_RS32285 (KGD87_32170) dacB 7918919..7921165 (+) 2247 WP_284664793.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  KGD87_RS32290 (KGD87_32175) ssb 7921373..7921873 (+) 501 WP_284664794.1 single-stranded DNA-binding protein Machinery gene
  KGD87_RS32295 (KGD87_32180) - 7921996..7922676 (-) 681 WP_284664795.1 succinate dehydrogenase -
  KGD87_RS32300 (KGD87_32185) - 7922939..7923823 (+) 885 WP_284664796.1 Hsp33 family molecular chaperone HslO -
  KGD87_RS32305 (KGD87_32190) - 7923858..7924889 (+) 1032 WP_284664797.1 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein -
  KGD87_RS32310 (KGD87_32195) - 7924952..7925716 (+) 765 WP_350100571.1 phosphoribosyltransferase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17726.46 Da        Isoelectric Point: 5.7963

>NTDB_id=581416 KGD87_RS32290 WP_284664794.1 7921373..7921873(+) (ssb) [Myxococcus sp. SDU36]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWVDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGGGRDAQDGMGGGGGGGGRRQFSQPRGGDNNDYGQPPPDDMGGGHGGGGNG
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=581416 KGD87_RS32290 WP_284664794.1 7921373..7921873(+) (ssb) [Myxococcus sp. SDU36]
ATGGCTGGAGGCGTGAACAAGGTCATCCTCATCGGCAACCTGGGGGCGGATCCAGAGGTCCGGTTCACTCCCGGCGGTCA
GGCGGTGGCGAACTTCCGCATCGCCACCAGCGAGAGCTGGGTCGACAAGAATGGCCAGAAGCAGGAGCGGACCGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAATACCTGAAGAAGGGACGGCAGTGCTACGTCGAGGGC
CGCCTGCAGACGCGCGAGTGGACGGACAAGGAGAACCGGAAGAACTACACCACCGAGGTCGTGGCCAACGCCGTGACGTT
CCTCGGCGGTGGGGGCCGTGACGCCCAGGACGGCATGGGCGGCGGGGGCGGTGGCGGTGGACGCCGGCAGTTCTCCCAGC
CGCGTGGGGGAGACAACAACGACTACGGTCAGCCGCCTCCGGACGACATGGGCGGTGGCCATGGCGGCGGCGGCAACGGC
GACGACGACATCCCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.634

100

0.536
  ssb Neisseria meningitidis MC58

43.678

100

0.458
  ssb Neisseria gonorrhoeae MS11

42.373

100

0.452
  ssb Glaesserella parasuis strain SC1401

40.884

100

0.446