Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L40_RS00035 Genome accession   NZ_CP077401
Coordinates   10421..10999 (+) Length   192 a.a.
NCBI ID   WP_033116044.1    Uniprot ID   A0AAQ0J003
Organism   Aeromonas sp. FDAARGOS 1410     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5421..15999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L40_RS00025 (I6L40_00025) - 5437..7110 (-) 1674 WP_216994812.1 diguanylate cyclase -
  I6L40_RS00030 (I6L40_00030) uvrA 7222..10050 (-) 2829 WP_139396001.1 excinuclease ABC subunit UvrA -
  I6L40_RS00035 (I6L40_00035) ssb 10421..10999 (+) 579 WP_033116044.1 single-stranded DNA-binding protein Machinery gene
  I6L40_RS21095 - 11227..11349 (-) 123 WP_005306071.1 hypothetical protein -
  I6L40_RS00040 (I6L40_00040) - 11819..12721 (+) 903 WP_216994813.1 cation diffusion facilitator family transporter -
  I6L40_RS00045 (I6L40_00045) yjbD 12865..13149 (+) 285 WP_042032196.1 DUF3811 domain-containing protein -
  I6L40_RS00050 (I6L40_00050) - 13653..13862 (+) 210 WP_156854046.1 cold-shock protein -
  I6L40_RS00055 (I6L40_00055) - 14135..15493 (+) 1359 WP_042032197.1 NCS2 family permease -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21259.77 Da        Isoelectric Point: 5.9301

>NTDB_id=581237 I6L40_RS00035 WP_033116044.1 10421..10999(+) (ssb) [Aeromonas sp. FDAARGOS 1410]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQQGGWGQPQQAMQQPMNQQRPAAAPQQNMQ
QQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=581237 I6L40_RS00035 WP_033116044.1 10421..10999(+) (ssb) [Aeromonas sp. FDAARGOS 1410]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAATACCTGAAGAAAGGCTCCCAGGTCTATGTC
GAAGGCAAGCTGCAGACTCGCAAGTGGCAAGATCAGAGTGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACCGGCGTCATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGTGGCCAGCAAGGTG
GCTGGGGTCAACCGCAGCAAGCCATGCAGCAGCCGATGAACCAGCAGCGTCCGGCCGCCGCTCCGCAGCAAAACATGCAG
CAGCAGGGTGGCTACGGCCGTCCGGCCCAGCAGCCCCAGTCTGCCCCGCCGGTCTACAACGAGCCGCCGATGGATTTCGA
CGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.192

100

0.714
  ssb Glaesserella parasuis strain SC1401

54.974

99.479

0.547
  ssb Neisseria gonorrhoeae MS11

47.619

98.438

0.469
  ssb Neisseria meningitidis MC58

47.09

98.438

0.464