Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L37_RS02045 Genome accession   NZ_CP077399
Coordinates   427636..428202 (+) Length   188 a.a.
NCBI ID   WP_026456622.1    Uniprot ID   A0A175VIV7
Organism   Aeromonas sp. FDAARGOS 1407     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 422636..433202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L37_RS02040 (I6L37_02040) uvrA 424429..427254 (-) 2826 WP_216993156.1 excinuclease ABC subunit UvrA -
  I6L37_RS02045 (I6L37_02045) ssb 427636..428202 (+) 567 WP_026456622.1 single-stranded DNA-binding protein Machinery gene
  I6L37_RS02050 (I6L37_02050) - 428328..429071 (+) 744 WP_216993157.1 ABC transporter substrate-binding protein -
  I6L37_RS22165 - 429146..429271 (-) 126 WP_019445191.1 hypothetical protein -
  I6L37_RS02055 (I6L37_02055) - 429691..430593 (+) 903 WP_216993158.1 cation diffusion facilitator family transporter -
  I6L37_RS02060 (I6L37_02060) yjbD 430737..431021 (+) 285 WP_216993159.1 DUF3811 domain-containing protein -
  I6L37_RS02065 (I6L37_02065) cspA 431493..431705 (+) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20858.29 Da        Isoelectric Point: 5.9301

>NTDB_id=581212 I6L37_RS02045 WP_026456622.1 427636..428202(+) (ssb) [Aeromonas sp. FDAARGOS 1407]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFSGVMQMLGGRPQGAGQGMGGQNQGGWGQPQQAMQQPMNQQRPAPQQNMQQQGG
YGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=581212 I6L37_RS02045 WP_026456622.1 427636..428202(+) (ssb) [Aeromonas sp. FDAARGOS 1407]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACCCTGGCCACCTCTGAAACCTGGCGCGACAAGCAAACCGGCGAGCAGAAAGAGCGCACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTCGCCGGTGAATACCTGAAAAAGGGTTCCCAGGTCTATGTG
GAAGGCAAGCTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAACGCTACACCACCGAAGTGCTGGTCGACAGCTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGCTGGTCAGGGTATGGGTGGCCAGAACCAGGGTGGCTGGG
GCCAGCCGCAGCAGGCCATGCAGCAGCCGATGAACCAGCAGCGTCCCGCTCCGCAGCAGAACATGCAGCAGCAGGGTGGT
TACGGCCGTCCGGCTCAGCAGCCCCAGTCAGCTCCGCCGGTCTATAACGAGCCGCCGATGGATTTCGACGACGATATTCC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A175VIV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.912

100

0.707
  ssb Glaesserella parasuis strain SC1401

53.763

98.936

0.532
  ssb Neisseria gonorrhoeae MS11

48.913

97.872

0.479
  ssb Neisseria meningitidis MC58

48.37

97.872

0.473