Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   I6L25_RS17205 Genome accession   NZ_CP077398
Coordinates   3677035..3677775 (+) Length   246 a.a.
NCBI ID   WP_004711658.1    Uniprot ID   A0AB36M2H9
Organism   Acinetobacter nosocomialis strain FDAARGOS 1395     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3672035..3682775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L25_RS17190 (I6L25_17190) ponA 3672616..3675174 (-) 2559 WP_004711652.1 penicillin-binding protein PBP1a -
  I6L25_RS17195 (I6L25_17195) comM 3675336..3676394 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  I6L25_RS17200 (I6L25_17200) pilN 3676394..3677038 (+) 645 WP_004711656.1 PilN domain-containing protein Machinery gene
  I6L25_RS17205 (I6L25_17205) pilO 3677035..3677775 (+) 741 WP_004711658.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L25_RS17210 (I6L25_17210) pilP 3677786..3678313 (+) 528 WP_004711660.1 pilus assembly protein PilP Machinery gene
  I6L25_RS17215 (I6L25_17215) pilQ 3678376..3680541 (+) 2166 WP_004711661.1 type IV pilus secretin PilQ family protein Machinery gene
  I6L25_RS17220 (I6L25_17220) aroK 3680553..3681122 (+) 570 WP_002051689.1 shikimate kinase AroK -
  I6L25_RS17225 (I6L25_17225) aroB 3681151..3682233 (+) 1083 WP_004711664.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27615.41 Da        Isoelectric Point: 4.9673

>NTDB_id=581194 I6L25_RS17205 WP_004711658.1 3677035..3677775(+) (pilO) [Acinetobacter nosocomialis strain FDAARGOS 1395]
MSQDELQELSLEQSASKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
GNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSISALPRIVTMHDFVVEAAPAKDSKSDIPVLNYSIKAKTYRYIGAPEPSAQPAKAAAANAPTS
PNAQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=581194 I6L25_RS17205 WP_004711658.1 3677035..3677775(+) (pilO) [Acinetobacter nosocomialis strain FDAARGOS 1395]
ATGAGTCAAGATGAACTGCAAGAATTATCATTAGAGCAATCAGCTTCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTTGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACTTGCTGGATTTTTATTT
TCTTTGCTGTATTAGCTTTGGGTTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGCCCAAGCTCAGGAA
GGTAATTTATTAAATGAATTTCGAGAAAAAGACTCGAAATTACGTAATCTTCAGCAGTATCAAGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAATTAGAACAATTGCCGAAAGAAACAGAGATTCCAAGTTTAGTTGAGGATATTAACTTAA
CTGGTGTGAACTCTGGATTGAAATTTAAAAATATCCGTTTAGAGGATGAAGTAAAGCAGGAAATTTTTATTGAACAACCA
ATTGCCATCGAAGCAACAGGCGACTATCACGCTTTCGGTGCTTTCGTAAGTAGTATCTCTGCTTTGCCACGTATTGTGAC
GATGCATGACTTTGTTGTAGAGGCTGCTCCAGCTAAAGATAGTAAGTCAGATATTCCTGTGCTTAATTATTCTATTAAAG
CCAAAACCTATCGATATATAGGAGCACCAGAGCCATCGGCACAACCAGCTAAGGCTGCAGCGGCGAATGCACCAACTAGC
CCTAATGCTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

89.431

100

0.894
  comO Acinetobacter baylyi ADP1

70.492

99.187

0.699