Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I6L25_RS17200 Genome accession   NZ_CP077398
Coordinates   3676394..3677038 (+) Length   214 a.a.
NCBI ID   WP_004711656.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS 1395     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3671394..3682038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L25_RS17180 (I6L25_17180) - 3671439..3671771 (+) 333 WP_002051722.1 hypothetical protein -
  I6L25_RS17185 (I6L25_17185) - 3671774..3672598 (+) 825 WP_004711651.1 putative RNA methyltransferase -
  I6L25_RS17190 (I6L25_17190) ponA 3672616..3675174 (-) 2559 WP_004711652.1 penicillin-binding protein PBP1a -
  I6L25_RS17195 (I6L25_17195) comM 3675336..3676394 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  I6L25_RS17200 (I6L25_17200) pilN 3676394..3677038 (+) 645 WP_004711656.1 PilN domain-containing protein Machinery gene
  I6L25_RS17205 (I6L25_17205) pilO 3677035..3677775 (+) 741 WP_004711658.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L25_RS17210 (I6L25_17210) pilP 3677786..3678313 (+) 528 WP_004711660.1 pilus assembly protein PilP Machinery gene
  I6L25_RS17215 (I6L25_17215) pilQ 3678376..3680541 (+) 2166 WP_004711661.1 type IV pilus secretin PilQ family protein Machinery gene
  I6L25_RS17220 (I6L25_17220) aroK 3680553..3681122 (+) 570 WP_002051689.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24210.66 Da        Isoelectric Point: 6.9919

>NTDB_id=581193 I6L25_RS17200 WP_004711656.1 3676394..3677038(+) (pilN) [Acinetobacter nosocomialis strain FDAARGOS 1395]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIKSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQNLQSQRPVVVRLVDELVRVTPPAMYLTKFSRVGDKFTIEGKAESPNTVAELLRNLESSPWYRNAFMNSFLA
NEDKKDKTASSLLPRVEDNYGSFVVTVDLGEMGVTTTNNDAVKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=581193 I6L25_RS17200 WP_004711656.1 3676394..3677038(+) (pilN) [Acinetobacter nosocomialis strain FDAARGOS 1395]
ATGGCAACAATTAACTTACTACCTTGGCGTGAAGAGCTGAGGGAACAACGAAAAAAACAATTTATAACTTTATGCTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGTGGATGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ACCAACTTATTAAAAGTACAAATCAAAACCTTGATCAGCAATTAAAAGCATTAAACGGTTTACAAGAGCAGCGTGATGCC
ATTATTGAGCGTATGAAGTTGATTCAAAATTTGCAGAGTCAACGGCCAGTAGTGGTGCGATTAGTTGATGAGCTCGTTCG
AGTCACGCCACCAGCAATGTATCTAACCAAATTCAGTCGAGTGGGGGATAAATTTACGATCGAGGGTAAAGCTGAGAGTC
CAAATACGGTAGCTGAATTGCTTCGTAACCTTGAATCGTCTCCTTGGTATCGTAATGCTTTTATGAATTCTTTCTTGGCT
AATGAAGATAAAAAAGATAAGACTGCGAGTTCTCTTCTTCCTAGGGTGGAAGATAACTATGGCAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGAATAACGATGCTGTTAAGCCAGCCGTAGCGAAAGACACGGGGGCAGCCA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

91.121

100

0.911
  comN Acinetobacter baylyi ADP1

72.5

93.458

0.678