Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   I6L25_RS17210 Genome accession   NZ_CP077398
Coordinates   3677786..3678313 (+) Length   175 a.a.
NCBI ID   WP_004711660.1    Uniprot ID   A0AB36M204
Organism   Acinetobacter nosocomialis strain FDAARGOS 1395     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3672786..3683313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L25_RS17195 (I6L25_17195) comM 3675336..3676394 (+) 1059 WP_004711654.1 pilus assembly protein PilM Machinery gene
  I6L25_RS17200 (I6L25_17200) pilN 3676394..3677038 (+) 645 WP_004711656.1 PilN domain-containing protein Machinery gene
  I6L25_RS17205 (I6L25_17205) pilO 3677035..3677775 (+) 741 WP_004711658.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L25_RS17210 (I6L25_17210) pilP 3677786..3678313 (+) 528 WP_004711660.1 pilus assembly protein PilP Machinery gene
  I6L25_RS17215 (I6L25_17215) pilQ 3678376..3680541 (+) 2166 WP_004711661.1 type IV pilus secretin PilQ family protein Machinery gene
  I6L25_RS17220 (I6L25_17220) aroK 3680553..3681122 (+) 570 WP_002051689.1 shikimate kinase AroK -
  I6L25_RS17225 (I6L25_17225) aroB 3681151..3682233 (+) 1083 WP_004711664.1 3-dehydroquinate synthase -
  I6L25_RS17230 (I6L25_17230) - 3682249..3683124 (+) 876 WP_004711666.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19413.63 Da        Isoelectric Point: 9.4011

>NTDB_id=581195 I6L25_RS17210 WP_004711660.1 3677786..3678313(+) (pilP) [Acinetobacter nosocomialis strain FDAARGOS 1395]
MKIKQITLYILACAALVGCDSRIDAVNQQMASIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLENYALEALNMKGSMRNNRGQILALIQTPDHQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=581195 I6L25_RS17210 WP_004711660.1 3677786..3678313(+) (pilP) [Acinetobacter nosocomialis strain FDAARGOS 1395]
ATGAAAATTAAGCAAATTACTCTTTATATTTTGGCCTGTGCCGCTCTTGTGGGATGTGATTCAAGAATTGACGCAGTCAA
TCAGCAAATGGCAAGTATTCGCAATCAGCCACCGCTCCCTATTGAACCAGCGCCGATTTTTACCCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGCCCGTTTATGCCAAGCTCACTGGCAGCTGAGCTTAAAATTATGGCCGGGAAGCGA
GTGTATCCAAATTTCTCACGTGCACCGCAACCATTAGAAAACTATGCACTTGAAGCCTTAAATATGAAAGGAAGCATGCG
TAATAATCGTGGTCAAATATTGGCTTTGATTCAGACACCGGATCATCAAATTGAACGGGTACAAGTGGGTAATTATATGG
GCATGAATCAGGGCCGTATTACTCATATTAGTCCAACCCAGATTGATCTGGTCGAGATTGTGCCAGATGGTCGAGAAGGC
TATGTCGAGAGACCGAGAACTTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

96.571

100

0.966
  comL Acinetobacter baylyi ADP1

71.264

99.429

0.709