Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L39_RS08295 Genome accession   NZ_CP077395
Coordinates   1746866..1747435 (-) Length   189 a.a.
NCBI ID   WP_042078675.1    Uniprot ID   -
Organism   Aeromonas sp. FDAARGOS 1409     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1741866..1752435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L39_RS08270 (I6L39_08270) - 1742298..1743020 (+) 723 WP_010675899.1 response regulator -
  I6L39_RS08275 (I6L39_08275) - 1743028..1744413 (+) 1386 WP_042078671.1 ATP-binding protein -
  I6L39_RS08280 (I6L39_08280) - 1744594..1744806 (-) 213 WP_042078672.1 RNA chaperone/antiterminator CspA -
  I6L39_RS08285 (I6L39_08285) yjbD 1745198..1745482 (-) 285 WP_042078673.1 DUF3811 domain-containing protein -
  I6L39_RS20315 - 1745768..1745890 (+) 123 WP_010675895.1 hypothetical protein -
  I6L39_RS08290 (I6L39_08290) - 1745937..1746707 (-) 771 WP_216991530.1 ABC transporter substrate-binding protein -
  I6L39_RS08295 (I6L39_08295) ssb 1746866..1747435 (-) 570 WP_042078675.1 single-stranded DNA-binding protein Machinery gene
  I6L39_RS08300 (I6L39_08300) - 1747954..1748592 (+) 639 WP_209795023.1 LuxR C-terminal-related transcriptional regulator -
  I6L39_RS08305 (I6L39_08305) uvrA 1748685..1751513 (+) 2829 WP_216991531.1 excinuclease ABC subunit UvrA -
  I6L39_RS20320 - 1751609..1751734 (-) 126 WP_005328766.1 hypothetical protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20809.19 Da        Isoelectric Point: 6.4802

>NTDB_id=581144 I6L39_RS08295 WP_042078675.1 1746866..1747435(-) (ssb) [Aeromonas sp. FDAARGOS 1409]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGAGQGMGGQSSQGNWGQPQQAAPQQSMHRPAAPQQNMQPQG
GYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=581144 I6L39_RS08295 WP_042078675.1 1746866..1747435(-) (ssb) [Aeromonas sp. FDAARGOS 1409]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGGACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTCGCCGGCGAATACCTGAAGAAGGGTTCCCAGGTCTATGTG
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAAAGCGGCCAGGAGCGCTACACCACCGAAGTGCTGGTAGACAGCTT
CACCGGCGTGATGCAAATGCTGGGTGGTCGTCCGCAGGGCGCCGGCCAGGGCATGGGGGGTCAGTCGTCCCAGGGCAACT
GGGGTCAACCGCAACAGGCTGCGCCGCAGCAGAGCATGCACCGCCCTGCCGCCCCGCAGCAGAACATGCAGCCCCAGGGG
GGCTACGGTCGTCCGGCCCAGCAACCGCAATCCGCACCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGACGACAT
CCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.394

100

0.698
  ssb Glaesserella parasuis strain SC1401

53.476

98.942

0.529
  ssb Neisseria gonorrhoeae MS11

47.312

98.413

0.466
  ssb Neisseria meningitidis MC58

46.237

98.413

0.455