Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I6L81_RS19725 | Genome accession | NZ_CP077388 |
| Coordinates | 4339290..4339787 (-) | Length | 165 a.a. |
| NCBI ID | WP_217008185.1 | Uniprot ID | - |
| Organism | Providencia rettgeri strain FDAARGOS 1451 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4324008..4383561 | 4339290..4339787 | within | 0 |
Gene organization within MGE regions
Location: 4324008..4383561
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6L81_RS19635 (I6L81_19635) | - | 4324008..4324703 (-) | 696 | WP_131680685.1 | hypothetical protein | - |
| I6L81_RS19640 (I6L81_19640) | - | 4324884..4325192 (-) | 309 | WP_042847942.1 | DUF5339 domain-containing protein | - |
| I6L81_RS19645 (I6L81_19645) | fliZ | 4326212..4326727 (+) | 516 | WP_042847941.1 | flagella biosynthesis regulatory protein FliZ | - |
| I6L81_RS19650 (I6L81_19650) | putA | 4326988..4330971 (-) | 3984 | WP_254178414.1 | trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase | - |
| I6L81_RS19655 (I6L81_19655) | putP | 4331472..4332956 (+) | 1485 | WP_042847939.1 | sodium/proline symporter PutP | - |
| I6L81_RS19660 (I6L81_19660) | cycA | 4333051..4334451 (-) | 1401 | WP_042847937.1 | D-serine/D-alanine/glycine transporter | - |
| I6L81_RS19670 (I6L81_19670) | - | 4334816..4335880 (-) | 1065 | WP_187710155.1 | site-specific integrase | - |
| I6L81_RS19680 (I6L81_19680) | - | 4336336..4336542 (-) | 207 | WP_217008177.1 | DUF4060 family protein | - |
| I6L81_RS19685 (I6L81_19685) | - | 4336567..4336758 (-) | 192 | WP_217008178.1 | hypothetical protein | - |
| I6L81_RS19690 (I6L81_19690) | - | 4336751..4336975 (-) | 225 | WP_217008179.1 | hypothetical protein | - |
| I6L81_RS19695 (I6L81_19695) | - | 4336972..4337328 (-) | 357 | WP_217008180.1 | phage protein NinX family protein | - |
| I6L81_RS19700 (I6L81_19700) | - | 4337321..4337506 (-) | 186 | WP_217008181.1 | hypothetical protein | - |
| I6L81_RS19705 (I6L81_19705) | - | 4337664..4337912 (-) | 249 | WP_217008182.1 | hypothetical protein | - |
| I6L81_RS19710 (I6L81_19710) | - | 4337902..4338144 (-) | 243 | WP_217008183.1 | hypothetical protein | - |
| I6L81_RS19715 (I6L81_19715) | - | 4338144..4338344 (-) | 201 | WP_096864895.1 | hypothetical protein | - |
| I6L81_RS19720 (I6L81_19720) | - | 4338344..4338625 (-) | 282 | WP_217008184.1 | hypothetical protein | - |
| I6L81_RS19725 (I6L81_19725) | ssb | 4339290..4339787 (-) | 498 | WP_217008185.1 | single-stranded DNA-binding protein | Machinery gene |
| I6L81_RS19730 (I6L81_19730) | - | 4339772..4340281 (-) | 510 | WP_217008186.1 | HNH endonuclease signature motif containing protein | - |
| I6L81_RS19735 (I6L81_19735) | - | 4340296..4341168 (-) | 873 | WP_217008187.1 | ATP-binding protein | - |
| I6L81_RS19740 (I6L81_19740) | - | 4341184..4341522 (-) | 339 | WP_217008188.1 | hypothetical protein | - |
| I6L81_RS20380 (I6L81_19745) | - | 4341515..4341667 (-) | 153 | WP_217008189.1 | hypothetical protein | - |
| I6L81_RS20385 (I6L81_19750) | - | 4341664..4341864 (-) | 201 | WP_166687446.1 | hypothetical protein | - |
| I6L81_RS20390 (I6L81_19755) | - | 4341868..4342017 (-) | 150 | WP_165568291.1 | hypothetical protein | - |
| I6L81_RS19760 (I6L81_19760) | - | 4342082..4342519 (-) | 438 | WP_217008190.1 | hypothetical protein | - |
| I6L81_RS19765 (I6L81_19765) | - | 4342581..4342913 (-) | 333 | WP_217008191.1 | hypothetical protein | - |
| I6L81_RS19770 (I6L81_19770) | - | 4342915..4343127 (-) | 213 | WP_129467332.1 | hypothetical protein | - |
| I6L81_RS20395 | - | 4343124..4343513 (-) | 390 | WP_254178416.1 | hypothetical protein | - |
| I6L81_RS20400 (I6L81_19780) | - | 4343547..4343810 (-) | 264 | WP_217008192.1 | hypothetical protein | - |
| I6L81_RS19785 (I6L81_19785) | - | 4344174..4344482 (-) | 309 | WP_129467313.1 | hypothetical protein | - |
| I6L81_RS19790 (I6L81_19790) | - | 4344932..4345438 (-) | 507 | WP_105881157.1 | hypothetical protein | - |
| I6L81_RS19795 (I6L81_19795) | - | 4345455..4346516 (-) | 1062 | WP_129467312.1 | hypothetical protein | - |
| I6L81_RS19800 (I6L81_19800) | - | 4346588..4346875 (-) | 288 | WP_240669311.1 | DUF3024 domain-containing protein | - |
| I6L81_RS20265 | - | 4346956..4347090 (-) | 135 | WP_255254513.1 | hypothetical protein | - |
| I6L81_RS19805 (I6L81_19805) | - | 4347239..4347910 (-) | 672 | WP_129467310.1 | S24 family peptidase | - |
| I6L81_RS19810 (I6L81_19810) | - | 4348009..4348215 (+) | 207 | WP_105881154.1 | helix-turn-helix transcriptional regulator | - |
| I6L81_RS19815 (I6L81_19815) | - | 4348348..4348668 (+) | 321 | WP_217008193.1 | CII family transcriptional regulator | - |
| I6L81_RS19820 (I6L81_19820) | - | 4348788..4349114 (+) | 327 | WP_140180822.1 | hypothetical protein | - |
| I6L81_RS19825 (I6L81_19825) | - | 4349375..4349809 (+) | 435 | WP_217008194.1 | hypothetical protein | - |
| I6L81_RS19830 (I6L81_19830) | - | 4349812..4351449 (+) | 1638 | WP_217008195.1 | DEAD/DEAH box helicase | - |
| I6L81_RS19835 (I6L81_19835) | - | 4351412..4352368 (+) | 957 | WP_217008196.1 | primase-helicase zinc-binding domain-containing protein | - |
| I6L81_RS19840 (I6L81_19840) | - | 4352394..4352684 (+) | 291 | WP_217008197.1 | hypothetical protein | - |
| I6L81_RS19845 (I6L81_19845) | - | 4352684..4352953 (+) | 270 | WP_217008198.1 | hypothetical protein | - |
| I6L81_RS19850 (I6L81_19850) | - | 4352940..4353140 (+) | 201 | WP_217008199.1 | hypothetical protein | - |
| I6L81_RS20405 (I6L81_19855) | - | 4353140..4353469 (+) | 330 | WP_217008200.1 | phage protein NinX family protein | - |
| I6L81_RS19860 (I6L81_19860) | - | 4353472..4353720 (+) | 249 | WP_217008201.1 | hypothetical protein | - |
| I6L81_RS19865 (I6L81_19865) | - | 4353741..4354214 (+) | 474 | WP_217008202.1 | recombination protein NinB | - |
| I6L81_RS19870 (I6L81_19870) | - | 4354211..4354408 (+) | 198 | WP_217008203.1 | hypothetical protein | - |
| I6L81_RS19875 (I6L81_19875) | - | 4354401..4354991 (+) | 591 | WP_217008204.1 | recombination protein NinG | - |
| I6L81_RS19880 (I6L81_19880) | - | 4355196..4355834 (+) | 639 | WP_217008205.1 | hypothetical protein | - |
| I6L81_RS19885 (I6L81_19885) | - | 4356191..4356604 (+) | 414 | WP_071548375.1 | putative holin | - |
| I6L81_RS20410 (I6L81_19890) | - | 4356601..4356879 (+) | 279 | WP_071548373.1 | hypothetical protein | - |
| I6L81_RS19895 (I6L81_19895) | - | 4356866..4357348 (+) | 483 | WP_217008206.1 | TIGR02594 family protein | - |
| I6L81_RS20415 (I6L81_19900) | - | 4357350..4357682 (+) | 333 | WP_217008207.1 | hypothetical protein | - |
| I6L81_RS19905 (I6L81_19905) | - | 4358053..4358436 (+) | 384 | WP_147675383.1 | Gp49 family protein | - |
| I6L81_RS19910 (I6L81_19910) | - | 4358755..4359267 (+) | 513 | WP_147675382.1 | KilA-N domain-containing protein | - |
| I6L81_RS19915 (I6L81_19915) | - | 4359384..4359623 (+) | 240 | WP_147675381.1 | hypothetical protein | - |
| I6L81_RS19920 (I6L81_19920) | - | 4359634..4359846 (+) | 213 | WP_129467051.1 | hypothetical protein | - |
| I6L81_RS19925 (I6L81_19925) | - | 4359915..4360331 (+) | 417 | WP_210815441.1 | hypothetical protein | - |
| I6L81_RS20420 (I6L81_19930) | - | 4360328..4360483 (+) | 156 | WP_166687374.1 | hypothetical protein | - |
| I6L81_RS19935 (I6L81_19935) | - | 4360499..4360759 (+) | 261 | WP_036983118.1 | DUF2560 family protein | - |
| I6L81_RS19940 (I6L81_19940) | - | 4360814..4361329 (+) | 516 | WP_217008208.1 | hypothetical protein | - |
| I6L81_RS19945 (I6L81_19945) | - | 4361332..4362816 (+) | 1485 | WP_217008209.1 | terminase | - |
| I6L81_RS19950 (I6L81_19950) | - | 4362818..4364194 (+) | 1377 | WP_217008210.1 | DUF4055 domain-containing protein | - |
| I6L81_RS19955 (I6L81_19955) | - | 4364203..4365267 (+) | 1065 | WP_217008211.1 | minor capsid protein | - |
| I6L81_RS19960 (I6L81_19960) | - | 4365342..4366028 (+) | 687 | WP_129467063.1 | hypothetical protein | - |
| I6L81_RS19965 (I6L81_19965) | - | 4366034..4366981 (+) | 948 | WP_105881124.1 | major capsid protein | - |
| I6L81_RS19970 (I6L81_19970) | - | 4367024..4367401 (+) | 378 | WP_211889573.1 | hypothetical protein | - |
| I6L81_RS19975 (I6L81_19975) | - | 4367403..4367774 (+) | 372 | WP_131679885.1 | hypothetical protein | - |
| I6L81_RS19980 (I6L81_19980) | - | 4367776..4368132 (+) | 357 | WP_131679886.1 | HK97 gp10 family phage protein | - |
| I6L81_RS19985 (I6L81_19985) | - | 4368129..4368497 (+) | 369 | WP_211889574.1 | hypothetical protein | - |
| I6L81_RS19990 (I6L81_19990) | - | 4368559..4369299 (+) | 741 | WP_042847850.1 | Ig-like domain-containing protein | - |
| I6L81_RS19995 (I6L81_19995) | - | 4369348..4370028 (+) | 681 | WP_217008212.1 | DUF6246 family protein | - |
| I6L81_RS20000 (I6L81_20000) | - | 4370056..4370979 (-) | 924 | WP_217008213.1 | hypothetical protein | - |
| I6L81_RS20005 (I6L81_20005) | - | 4370982..4371233 (-) | 252 | WP_217008214.1 | Arc family DNA-binding protein | - |
| I6L81_RS20010 (I6L81_20010) | umuD | 4371458..4371871 (+) | 414 | WP_217008215.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| I6L81_RS20015 (I6L81_20015) | umuC | 4371871..4373133 (+) | 1263 | WP_217008216.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| I6L81_RS20020 (I6L81_20020) | - | 4373294..4375753 (+) | 2460 | WP_217008217.1 | hypothetical protein | - |
| I6L81_RS20025 (I6L81_20025) | - | 4376115..4376414 (+) | 300 | WP_217008218.1 | hypothetical protein | - |
| I6L81_RS20030 (I6L81_20030) | - | 4376520..4379750 (+) | 3231 | WP_217008219.1 | tape measure protein | - |
| I6L81_RS20035 (I6L81_20035) | - | 4379759..4380244 (+) | 486 | WP_217008220.1 | hypothetical protein | - |
| I6L81_RS20040 (I6L81_20040) | - | 4380241..4380708 (+) | 468 | WP_210782033.1 | DUF1833 family protein | - |
| I6L81_RS20045 (I6L81_20045) | - | 4380708..4381100 (+) | 393 | WP_217008221.1 | NlpC/P60 family protein | - |
| I6L81_RS20050 (I6L81_20050) | - | 4381087..4383561 (+) | 2475 | WP_217008222.1 | host specificity factor TipJ family phage tail protein | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18406.72 Da Isoelectric Point: 6.7195
>NTDB_id=581081 I6L81_RS19725 WP_217008185.1 4339290..4339787(-) (ssb) [Providencia rettgeri strain FDAARGOS 1451]
MEPHLMSRGVNKVILIGNTCDDPTVRYMPNGGAVTNFTLATNDYWTDKQTGQKKEKAEFHRVVIFGKLAEVAGEYLKKGS
QVYIEGFLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGNGGSNQAGSQQPARQTQQNEPPMDWDDQIPFAPIGLPYPRH
AIYVI
MEPHLMSRGVNKVILIGNTCDDPTVRYMPNGGAVTNFTLATNDYWTDKQTGQKKEKAEFHRVVIFGKLAEVAGEYLKKGS
QVYIEGFLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGNGGSNQAGSQQPARQTQQNEPPMDWDDQIPFAPIGLPYPRH
AIYVI
Nucleotide
Download Length: 498 bp
>NTDB_id=581081 I6L81_RS19725 WP_217008185.1 4339290..4339787(-) (ssb) [Providencia rettgeri strain FDAARGOS 1451]
ATGGAGCCACATCTAATGTCTAGAGGCGTAAATAAGGTCATATTAATTGGAAATACTTGTGATGACCCGACTGTTAGATA
CATGCCAAATGGCGGTGCTGTCACCAACTTTACATTAGCAACAAATGACTACTGGACTGACAAACAAACAGGACAAAAGA
AAGAAAAAGCTGAGTTTCACCGTGTGGTAATTTTCGGCAAGTTAGCTGAAGTTGCAGGTGAATATCTGAAAAAAGGCTCA
CAAGTCTATATCGAAGGTTTCTTGCAAACCAGAAAATGGCAAGACCAGAGCGGGCAAGACCGATACACAACGGAAGTGGT
AGTTAATATCGGTGGCTCTATGCAAATGCTAGGCGGTAACGGTGGTAGCAATCAAGCAGGGAGTCAGCAGCCAGCGCGAC
AAACTCAGCAGAATGAGCCACCGATGGATTGGGATGACCAAATACCTTTCGCTCCTATCGGACTCCCCTACCCACGCCAC
GCTATTTATGTGATTTAA
ATGGAGCCACATCTAATGTCTAGAGGCGTAAATAAGGTCATATTAATTGGAAATACTTGTGATGACCCGACTGTTAGATA
CATGCCAAATGGCGGTGCTGTCACCAACTTTACATTAGCAACAAATGACTACTGGACTGACAAACAAACAGGACAAAAGA
AAGAAAAAGCTGAGTTTCACCGTGTGGTAATTTTCGGCAAGTTAGCTGAAGTTGCAGGTGAATATCTGAAAAAAGGCTCA
CAAGTCTATATCGAAGGTTTCTTGCAAACCAGAAAATGGCAAGACCAGAGCGGGCAAGACCGATACACAACGGAAGTGGT
AGTTAATATCGGTGGCTCTATGCAAATGCTAGGCGGTAACGGTGGTAGCAATCAAGCAGGGAGTCAGCAGCCAGCGCGAC
AAACTCAGCAGAATGAGCCACCGATGGATTGGGATGACCAAATACCTTTCGCTCCTATCGGACTCCCCTACCCACGCCAC
GCTATTTATGTGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
61.582 |
100 |
0.661 |
| ssb | Glaesserella parasuis strain SC1401 |
48.066 |
100 |
0.527 |
| ssb | Neisseria meningitidis MC58 |
43.114 |
100 |
0.436 |
| ssb | Neisseria gonorrhoeae MS11 |
43.636 |
100 |
0.436 |