Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L36_RS10965 Genome accession   NZ_CP077378
Coordinates   2333895..2334464 (+) Length   189 a.a.
NCBI ID   WP_010674212.1    Uniprot ID   A0A081LN46
Organism   Aeromonas sp. FDAARGOS 1406     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2328895..2339464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L36_RS22180 - 2329576..2329701 (+) 126 WP_010674215.1 hypothetical protein -
  I6L36_RS10955 (I6L36_10955) uvrA 2329818..2332646 (-) 2829 WP_039040117.1 excinuclease ABC subunit UvrA -
  I6L36_RS10960 (I6L36_10960) - 2332739..2333377 (-) 639 WP_010674213.1 LuxR C-terminal-related transcriptional regulator -
  I6L36_RS10965 (I6L36_10965) ssb 2333895..2334464 (+) 570 WP_010674212.1 single-stranded DNA-binding protein Machinery gene
  I6L36_RS10970 (I6L36_10970) - 2334626..2335396 (+) 771 WP_109112161.1 ABC transporter substrate-binding protein -
  I6L36_RS22185 - 2335443..2335565 (-) 123 WP_010675895.1 hypothetical protein -
  I6L36_RS10975 (I6L36_10975) yjbD 2335861..2336145 (+) 285 WP_039040119.1 DUF3811 domain-containing protein -
  I6L36_RS10980 (I6L36_10980) - 2336538..2336747 (+) 210 WP_010675897.1 cold shock domain-containing protein -
  I6L36_RS10985 (I6L36_10985) - 2336925..2338310 (-) 1386 WP_010675898.1 ATP-binding protein -
  I6L36_RS10990 (I6L36_10990) - 2338318..2339040 (-) 723 WP_010675899.1 response regulator -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20813.18 Da        Isoelectric Point: 5.9247

>NTDB_id=581013 I6L36_RS10965 WP_010674212.1 2333895..2334464(+) (ssb) [Aeromonas sp. FDAARGOS 1406]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGGQGMGGQSSQGNWGQPQQAAPQQNMQRPAAPQQNMQPQG
GYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=581013 I6L36_RS10965 WP_010674212.1 2333895..2334464(+) (ssb) [Aeromonas sp. FDAARGOS 1406]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGATACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AATGGCACCGTGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAGCTCCAGACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACCGAGGTGCTGGTCGACAGCTT
CACCGGTGTGATGCAGATGCTGGGTGGCCGTCCGCAGGGCGGTGGCCAGGGCATGGGCGGCCAGTCATCCCAGGGCAACT
GGGGCCAGCCGCAACAGGCTGCACCGCAACAGAACATGCAACGTCCTGCTGCCCCGCAGCAGAACATGCAACCGCAAGGC
GGTTACGGCCGTCCGGCCCAGCAGCCGCAATCCGCCCCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGACGATAT
TCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081LN46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.912

100

0.704
  ssb Glaesserella parasuis strain SC1401

54.011

98.942

0.534
  ssb Neisseria meningitidis MC58

47.34

99.471

0.471
  ssb Neisseria gonorrhoeae MS11

46.774

98.413

0.46