Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   MTR79_RS05105 Genome accession   NZ_CP094918
Coordinates   1080326..1081300 (+) Length   324 a.a.
NCBI ID   WP_086704379.1    Uniprot ID   A0ABN3X9F2
Organism   Streptomyces sp. BJ20     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1075326..1086300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTR79_RS05085 - 1075478..1076602 (+) 1125 WP_244789345.1 dipeptide ABC transporter ATP-binding protein -
  MTR79_RS05090 - 1076800..1078419 (+) 1620 WP_244789347.1 ABC transporter substrate-binding protein -
  MTR79_RS05095 - 1078426..1079349 (+) 924 WP_244789349.1 ABC transporter permease -
  MTR79_RS05100 - 1079342..1080319 (+) 978 WP_048455809.1 ABC transporter permease -
  MTR79_RS05105 amiE 1080326..1081300 (+) 975 WP_086704379.1 ABC transporter ATP-binding protein Regulator
  MTR79_RS05110 - 1081293..1082315 (+) 1023 WP_244789351.1 dipeptide ABC transporter ATP-binding protein -
  MTR79_RS05115 - 1082497..1084635 (-) 2139 WP_244789353.1 prolyl oligopeptidase family serine peptidase -
  MTR79_RS05120 - 1084814..1085008 (+) 195 WP_048455805.1 hypothetical protein -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35737.35 Da        Isoelectric Point: 6.7641

>NTDB_id=580988 MTR79_RS05105 WP_086704379.1 1080326..1081300(+) (amiE) [Streptomyces sp. BJ20]
MLLEVRDLHVEFRTRDGVAKAVNGVTYGVDEGETLAVLGESGSGKSVTAQAVMGILDTPPGRITGGEVVFQGRDLLKLKE
EERRRIRGAEMAMIFQDALSALNPVLTVGDQLAEMFTVHRGMSRKDARAKAVELMDRVRIPAARERVRQYPHQFSGGMRQ
RIMIAMAIALEPALIIADEPTTALDVTVQAQVMELLAELQREYRMGLILITHDLGVVADVADRIAVMYAGRIVESAPVHE
IYKAPAHPYTRGLLDSIPRLDHKGRELYAIKGLPPNLTRIPPGCPFHPRCPLARDVCTTDDPPLYEVSGTRGSACHFWRE
CLDG

Nucleotide


Download         Length: 975 bp        

>NTDB_id=580988 MTR79_RS05105 WP_086704379.1 1080326..1081300(+) (amiE) [Streptomyces sp. BJ20]
GTGCTGCTCGAAGTGCGCGACCTGCACGTGGAGTTCCGGACCCGGGACGGTGTGGCGAAGGCGGTCAACGGGGTCACCTA
CGGCGTCGACGAGGGGGAGACCCTGGCCGTGCTGGGCGAGTCCGGCTCCGGCAAGTCGGTGACCGCGCAGGCGGTCATGG
GCATCCTCGACACCCCGCCCGGCCGGATCACCGGCGGGGAGGTGGTCTTCCAGGGCCGGGACCTGCTGAAGCTCAAGGAG
GAGGAGCGCCGGCGGATCCGGGGCGCCGAGATGGCGATGATCTTCCAGGACGCGCTGTCCGCGCTGAATCCGGTGCTCAC
CGTGGGCGACCAGCTCGCCGAGATGTTCACCGTGCACCGGGGCATGTCCCGCAAGGACGCGCGCGCCAAGGCGGTCGAGC
TGATGGACCGGGTGCGCATCCCGGCCGCGCGGGAGCGGGTGCGGCAGTACCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCGATGGCGATCGCCCTGGAGCCGGCGCTGATCATCGCCGACGAGCCGACCACCGCCCTCGACGTCAC
CGTCCAGGCCCAGGTGATGGAGCTGCTGGCGGAGCTCCAGCGGGAGTACCGGATGGGGCTCATCCTCATCACCCACGACC
TGGGCGTGGTCGCCGACGTCGCCGACCGCATCGCGGTGATGTACGCGGGCCGGATCGTGGAGTCGGCGCCGGTGCACGAG
ATCTACAAGGCCCCCGCGCACCCGTACACCCGGGGCCTGCTGGACTCCATCCCGCGCCTGGACCACAAGGGGCGGGAGCT
GTACGCCATCAAGGGCCTGCCGCCCAACCTCACCCGCATCCCGCCCGGCTGCCCGTTCCACCCGCGCTGCCCGCTGGCCC
GGGACGTGTGCACGACCGACGATCCGCCGCTGTACGAGGTCTCCGGCACGCGCGGGAGCGCCTGCCACTTCTGGAGGGAG
TGCCTGGATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.729

99.074

0.463
  amiE Streptococcus thermophilus LMG 18311

46.106

99.074

0.457
  amiE Streptococcus thermophilus LMD-9

46.106

99.074

0.457
  oppD Streptococcus mutans UA159

46.178

96.914

0.448