Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L24_RS04820 Genome accession   NZ_CP077369
Coordinates   1042349..1042936 (+) Length   195 a.a.
NCBI ID   WP_004281391.1    Uniprot ID   A0A2K8UM26
Organism   Acinetobacter lwoffii strain FDAARGOS 1394     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1037349..1047936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L24_RS04800 (I6L24_04800) - 1038209..1038577 (-) 369 WP_005105375.1 hypothetical protein -
  I6L24_RS04805 (I6L24_04805) tenA 1038797..1039468 (-) 672 WP_004729210.1 thiaminase II -
  I6L24_RS04810 (I6L24_04810) - 1039691..1040779 (+) 1089 WP_004647275.1 DUF475 domain-containing protein -
  I6L24_RS04815 (I6L24_04815) - 1040933..1042297 (+) 1365 WP_017398000.1 MFS transporter -
  I6L24_RS04820 (I6L24_04820) ssb 1042349..1042936 (+) 588 WP_004281391.1 single-stranded DNA-binding protein Machinery gene
  I6L24_RS04825 (I6L24_04825) ahpC 1043245..1043808 (+) 564 WP_005105379.1 alkyl hydroperoxide reductase subunit C -
  I6L24_RS04830 (I6L24_04830) - 1044430..1045737 (+) 1308 WP_005105380.1 FAD-dependent oxidoreductase -
  I6L24_RS04835 (I6L24_04835) - 1045741..1046589 (+) 849 WP_086044219.1 SAM-dependent methyltransferase -
  I6L24_RS04845 (I6L24_04845) - 1046946..1047173 (-) 228 WP_004647282.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21359.06 Da        Isoelectric Point: 6.4820

>NTDB_id=580988 I6L24_RS04820 WP_004281391.1 1042349..1042936(+) (ssb) [Acinetobacter lwoffii strain FDAARGOS 1394]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRPQNDQGESSFNQPRFNNNNQANNNQGGYGNNPQSGYGSAPQQGGFNNN
QGGGYGNNNPSGFAPKSAPAPTAAPAADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=580988 I6L24_RS04820 WP_004281391.1 1042349..1042936(+) (ssb) [Acinetobacter lwoffii strain FDAARGOS 1394]
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGCTC
TCTCACTCAATTCTCGATCGCAACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGTGAAATTGCGCAGCAATATCTTCGTAAAGGTTCAAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGACCAGAATGGTCAGGAACGCTATACGACGGAAATTCGTGGTGAACAAATGCAGAT
GCTAGACTCTAGCCGTCCTCAAAATGATCAGGGCGAGAGCAGCTTTAACCAGCCACGCTTTAATAACAATAATCAGGCGA
ACAACAACCAGGGCGGTTATGGCAATAACCCGCAATCAGGTTATGGTTCAGCACCACAGCAAGGCGGTTTTAACAACAAC
CAGGGCGGCGGTTATGGCAACAATAACCCGAGTGGTTTTGCGCCAAAATCTGCACCTGCTCCAACAGCAGCACCTGCAGC
AGATCTAGATGATGACCTTCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8UM26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.759

100

0.528
  ssb Vibrio cholerae strain A1552

41.206

100

0.421
  ssb Neisseria meningitidis MC58

37.5

98.462

0.369
  ssb Neisseria gonorrhoeae MS11

37.5

98.462

0.369