Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   I6L24_RS02950 Genome accession   NZ_CP077369
Coordinates   610359..611498 (+) Length   379 a.a.
NCBI ID   WP_216986401.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS 1394     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 605359..616498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L24_RS02930 (I6L24_02930) - 605856..607886 (-) 2031 WP_216986398.1 TonB-dependent copper receptor -
  I6L24_RS02935 (I6L24_02935) - 607959..608369 (-) 411 WP_216986399.1 DUF2946 family protein -
  I6L24_RS02940 (I6L24_02940) def 608462..608992 (-) 531 WP_004644875.1 peptide deformylase -
  I6L24_RS02945 (I6L24_02945) tsaP 609113..610267 (+) 1155 WP_216986400.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  I6L24_RS02950 (I6L24_02950) dprA 610359..611498 (+) 1140 WP_216986401.1 DNA-processing protein DprA Machinery gene
  I6L24_RS02955 (I6L24_02955) - 611540..612109 (+) 570 WP_216986402.1 L-threonylcarbamoyladenylate synthase -
  I6L24_RS02960 (I6L24_02960) - 612555..613451 (-) 897 WP_216986403.1 DMT family transporter -
  I6L24_RS02965 (I6L24_02965) - 613642..614187 (+) 546 WP_216986404.1 glutathione peroxidase -
  I6L24_RS02970 (I6L24_02970) - 614511..615110 (+) 600 WP_005108413.1 hypothetical protein -
  I6L24_RS02975 (I6L24_02975) - 615252..616268 (+) 1017 WP_044112397.1 pirin family protein -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 42584.25 Da        Isoelectric Point: 6.6831

>NTDB_id=580986 I6L24_RS02950 WP_216986401.1 610359..611498(+) (dprA) [Acinetobacter lwoffii strain FDAARGOS 1394]
MLNTLSTAQIHAITLWYLLQHSLSSFYKISQHYADLAHAIDGSQTETWRKLGIHKNHIQRLQDFQSSESQLHFQRSLEQI
QLHSDFVLLHTDAEYPQQLSHYAHKPPILFGQGYADQLLQPQIAIVGSRKPSLHGRQVAYDFAFYLSEQGFYINSGLAQG
IDEAAHQAALQHRRTIAVMGTGIEQTYPAAHQTLRQQIIEHGGTVITEFLPFTPPLQQHFPRRNRIVSGLSLGVIVAEAA
LKSGSLLTAQWAAEQGKTTFAIPGHIYSEHHQGCHQLIREGAILIDHPQQVIEELALATQWQALENTPKLEVAAAESQQI
PPHLLSLYNQLDWVGQSLDQLGTQVQQEVSSLTSQLMELELLGFCTQQAGLYLRCRILK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=580986 I6L24_RS02950 WP_216986401.1 610359..611498(+) (dprA) [Acinetobacter lwoffii strain FDAARGOS 1394]
ATGTTGAATACATTGTCGACAGCGCAAATCCATGCCATTACGCTGTGGTATTTACTGCAACACTCCCTCAGCAGCTTTTA
TAAAATCAGTCAGCATTATGCAGACCTCGCCCATGCAATTGATGGTTCTCAAACCGAAACCTGGCGTAAGTTGGGCATTC
ATAAAAACCACATTCAGCGCCTGCAAGATTTCCAGTCAAGTGAGTCGCAGCTCCATTTTCAGCGCAGTCTTGAGCAGATC
CAGTTGCACAGTGACTTTGTGCTTTTACATACAGATGCCGAATATCCACAGCAATTGAGCCATTATGCGCATAAGCCGCC
AATCCTGTTCGGGCAAGGGTATGCAGATCAATTGCTGCAACCGCAAATCGCGATTGTGGGGAGTCGCAAGCCAAGTCTGC
ACGGCCGGCAAGTCGCTTATGACTTTGCTTTTTATTTGAGTGAACAGGGTTTTTATATTAATAGTGGCCTGGCACAAGGG
ATTGATGAAGCAGCACATCAGGCCGCATTACAACATCGGCGAACGATTGCAGTGATGGGCACAGGCATTGAACAGACCTA
CCCTGCCGCCCATCAAACACTACGTCAGCAAATCATCGAACATGGAGGTACGGTCATTACTGAGTTTTTGCCATTTACTC
CCCCCTTACAGCAGCATTTTCCACGGCGTAACCGAATTGTCAGTGGCTTAAGCCTCGGGGTGATTGTGGCAGAAGCCGCC
TTGAAAAGTGGTTCATTGCTGACCGCACAATGGGCAGCGGAACAAGGCAAGACCACATTCGCCATTCCGGGACATATTTA
CAGCGAGCATCATCAGGGCTGCCACCAACTGATTCGTGAAGGTGCAATTCTGATTGATCACCCGCAGCAGGTCATCGAAG
AACTGGCACTGGCGACGCAATGGCAGGCTTTGGAAAATACTCCCAAACTAGAAGTCGCTGCAGCAGAATCACAACAGATC
CCACCACATCTTCTTAGTCTATATAACCAGCTGGACTGGGTGGGACAGAGTCTGGATCAACTGGGAACGCAAGTGCAACA
AGAGGTATCTTCCCTGACAAGTCAACTGATGGAACTGGAGTTACTCGGTTTTTGCACCCAGCAAGCCGGCCTGTATCTAC
GTTGTCGGATTCTTAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

61.436

99.208

0.609

  dprA Acinetobacter baumannii D1279779

61.17

99.208

0.607

  dprA Acinetobacter baylyi ADP1

58.005

100

0.583