Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   I6L24_RS02945 Genome accession   NZ_CP077369
Coordinates   609113..610267 (+) Length   384 a.a.
NCBI ID   WP_216986400.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS 1394     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 604113..615267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L24_RS02930 (I6L24_02930) - 605856..607886 (-) 2031 WP_216986398.1 TonB-dependent copper receptor -
  I6L24_RS02935 (I6L24_02935) - 607959..608369 (-) 411 WP_216986399.1 DUF2946 family protein -
  I6L24_RS02940 (I6L24_02940) def 608462..608992 (-) 531 WP_004644875.1 peptide deformylase -
  I6L24_RS02945 (I6L24_02945) tsaP 609113..610267 (+) 1155 WP_216986400.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  I6L24_RS02950 (I6L24_02950) dprA 610359..611498 (+) 1140 WP_216986401.1 DNA-processing protein DprA Machinery gene
  I6L24_RS02955 (I6L24_02955) - 611540..612109 (+) 570 WP_216986402.1 L-threonylcarbamoyladenylate synthase -
  I6L24_RS02960 (I6L24_02960) - 612555..613451 (-) 897 WP_216986403.1 DMT family transporter -
  I6L24_RS02965 (I6L24_02965) - 613642..614187 (+) 546 WP_216986404.1 glutathione peroxidase -
  I6L24_RS02970 (I6L24_02970) - 614511..615110 (+) 600 WP_005108413.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42213.39 Da        Isoelectric Point: 8.8381

>NTDB_id=580985 I6L24_RS02945 WP_216986400.1 609113..610267(+) (tsaP) [Acinetobacter lwoffii strain FDAARGOS 1394]
MKKVLKGMPFFSALGFKNQMLALAVCVGVSMGTIHSAEAAPARNVNPPALKANAPNVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCDYQGRPIIGKDEGDGCEGIISRYLGSTSLQPQIRVESLNNTIPVIPLEHIKQWLE
RYTLLAPDSVQGTPYILGTADQRVLAGKGQKVYARGNGLEVGQRYAVYREAEPYVFTDANGKKYTAALELQQVASGIAVR
SEGDVTTLELTDSYNAEVRRGDRVLAEYDPMLPTLFYPTNAENIAAGGQIVRVLGSIGTAARHSVVTIDRGTAHGVQTGH
VFSVNQKGEVVTDPKTKERVQLPGERIGQVMVFKTFDQLSYAYVLESELPIKVGANIQPPLLED

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=580985 I6L24_RS02945 WP_216986400.1 609113..610267(+) (tsaP) [Acinetobacter lwoffii strain FDAARGOS 1394]
ATGAAAAAGGTTTTGAAGGGCATGCCATTTTTTAGTGCCTTGGGGTTTAAAAATCAGATGCTGGCACTTGCAGTTTGTGT
AGGCGTCAGTATGGGGACCATTCATTCTGCCGAGGCAGCACCTGCACGCAACGTCAATCCACCGGCATTAAAAGCCAATG
CACCGAACGTTTATGTGGTGAAAAAAGGCGATACGCTTTGGGATATCTCGAAACGCTTCCTGAAAAATCCGGTCCGTTGG
CCGGAAATCTGGGCGAGTAATAAGCACGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGCCTGTTGATGTGTGATTA
CCAGGGCCGCCCGATTATTGGTAAAGACGAAGGTGATGGTTGTGAAGGTATTATCAGCCGCTATCTTGGCAGTACTTCTC
TGCAGCCCCAGATTCGTGTTGAATCTTTAAATAATACGATTCCCGTGATTCCGCTTGAGCACATCAAGCAGTGGCTAGAA
CGCTACACCCTTCTGGCACCTGATTCAGTTCAGGGCACACCCTACATTCTCGGAACTGCAGATCAGCGCGTACTGGCTGG
CAAAGGTCAGAAAGTCTATGCACGTGGTAACGGTCTGGAAGTTGGTCAACGCTATGCCGTGTATCGCGAAGCTGAACCGT
ATGTATTTACCGATGCGAATGGCAAGAAATATACGGCTGCACTCGAGCTGCAACAGGTGGCATCCGGTATTGCAGTACGT
AGCGAAGGTGATGTGACTACCCTTGAACTGACGGATAGTTACAATGCGGAAGTACGTCGCGGTGACCGCGTACTCGCAGA
ATACGATCCGATGTTACCGACGCTGTTCTATCCAACCAATGCAGAAAATATTGCTGCCGGTGGTCAGATTGTGCGTGTAT
TGGGGTCGATTGGTACAGCAGCACGTCATAGTGTCGTCACCATTGACCGTGGTACGGCACATGGGGTTCAGACGGGTCAT
GTCTTTAGCGTGAATCAAAAAGGTGAAGTGGTGACTGATCCGAAAACCAAAGAACGGGTGCAATTACCGGGCGAGCGTAT
TGGTCAGGTCATGGTATTTAAAACCTTCGATCAATTGAGCTACGCTTATGTGCTGGAAAGTGAATTACCAATCAAGGTTG
GTGCCAACATTCAGCCGCCACTATTAGAAGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

68.312

100

0.685