Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L45_RS08110 Genome accession   NZ_CP077363
Coordinates   1707537..1708106 (-) Length   189 a.a.
NCBI ID   WP_043808882.1    Uniprot ID   A0A5F0K5M8
Organism   Aeromonas sp. FDAARGOS 1415     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1702537..1713106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L45_RS08085 (I6L45_08085) - 1702954..1703676 (+) 723 WP_043762590.1 response regulator -
  I6L45_RS08090 (I6L45_08090) - 1703684..1705069 (+) 1386 WP_216983915.1 ATP-binding protein -
  I6L45_RS08095 (I6L45_08095) - 1705248..1705457 (-) 210 WP_010675897.1 cold shock domain-containing protein -
  I6L45_RS08100 (I6L45_08100) yjbD 1705850..1706134 (-) 285 WP_043762593.1 DUF3811 domain-containing protein -
  I6L45_RS20130 - 1706439..1706561 (+) 123 WP_081843838.1 hypothetical protein -
  I6L45_RS08105 (I6L45_08105) - 1706609..1707379 (-) 771 WP_216983916.1 ABC transporter substrate-binding protein -
  I6L45_RS08110 (I6L45_08110) ssb 1707537..1708106 (-) 570 WP_043808882.1 single-stranded DNA-binding protein Machinery gene
  I6L45_RS08115 (I6L45_08115) - 1708610..1709248 (+) 639 WP_081843839.1 LuxR C-terminal-related transcriptional regulator -
  I6L45_RS08120 (I6L45_08120) uvrA 1709342..1712170 (+) 2829 WP_216983917.1 excinuclease ABC subunit UvrA -
  I6L45_RS20135 - 1712307..1712432 (-) 126 WP_268749070.1 hypothetical protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20827.21 Da        Isoelectric Point: 5.9247

>NTDB_id=580893 I6L45_RS08110 WP_043808882.1 1707537..1708106(-) (ssb) [Aeromonas sp. FDAARGOS 1415]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGAGQGMGGQSSQGNWGQPQQAAPQQNMQRPAAPQQNMQPQG
GYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=580893 I6L45_RS08110 WP_043808882.1 1707537..1708106(-) (ssb) [Aeromonas sp. FDAARGOS 1415]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGCCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGGACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTCGCTGGCGAATACCTGAAGAAGGGTTCCCAGGTCTATGTG
GAAGGCAAGTTGCAGACCCGCAAGTGGCAGGATCAGAGCGGCCAGGAGCGATACACCACCGAGGTACTGGTAGACAGCTT
CACCGGTGTGATGCAGATGCTGGGTGGCCGTCCGCAGGGCGCCGGTCAGGGCATGGGCGGCCAGTCCTCCCAGGGCAACT
GGGGCCAGCCGCAACAGGCCGCACCGCAGCAGAACATGCAACGTCCTGCCGCTCCGCAGCAGAACATGCAGCCCCAGGGT
GGCTACGGCCGTCCGGCCCAGCAGCCGCAATCCGCACCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGACGATAT
TCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5F0K5M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

68.394

100

0.698
  ssb Glaesserella parasuis strain SC1401

53.476

98.942

0.529
  ssb Neisseria meningitidis MC58

47.34

99.471

0.471
  ssb Neisseria gonorrhoeae MS11

47.312

98.413

0.466