Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   I6L23_RS08430 Genome accession   NZ_CP077336
Coordinates   1813037..1813759 (+) Length   240 a.a.
NCBI ID   WP_004644950.1    Uniprot ID   N8Q764
Organism   Acinetobacter lwoffii strain FDAARGOS 1393     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1808037..1818759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L23_RS08415 (I6L23_08415) ponA 1808653..1811178 (-) 2526 WP_016806915.1 penicillin-binding protein PBP1a -
  I6L23_RS08420 (I6L23_08420) pilM 1811344..1812402 (+) 1059 WP_004644949.1 pilus assembly protein PilM Machinery gene
  I6L23_RS08425 (I6L23_08425) comN 1812402..1813040 (+) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  I6L23_RS08430 (I6L23_08430) comO 1813037..1813759 (+) 723 WP_004644950.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L23_RS08435 (I6L23_08435) pilP 1813759..1814286 (+) 528 WP_004644951.1 pilus assembly protein PilP Machinery gene
  I6L23_RS08440 (I6L23_08440) pilQ 1814305..1816458 (+) 2154 WP_004644953.1 type IV pilus secretin PilQ family protein Machinery gene
  I6L23_RS08445 (I6L23_08445) aroK 1816495..1817031 (+) 537 WP_004644955.1 shikimate kinase AroK -
  I6L23_RS08450 (I6L23_08450) aroB 1817060..1818139 (+) 1080 WP_004644956.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27222.73 Da        Isoelectric Point: 4.5431

>NTDB_id=580867 I6L23_RS08430 WP_004644950.1 1813037..1813759(+) (comO) [Acinetobacter lwoffii strain FDAARGOS 1393]
MSNEEFDEFSQDVVAVPKNKMTVEKFFQQFNTLDPNNYGSWPLSVKITCWIFIAALAFAVIYFVMIRSTIESISQASTQE
QNLLNEFREKESKLRNLQQYQIQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEIKQEFFIEQP
IAIEATGDYHAFGSFVSSIAGLSRIVTLHDFTITGTENKEKKSEIPVIDYVVKAKTYRYVGNAEGAAAQPEANSTTQGAQ

Nucleotide


Download         Length: 723 bp        

>NTDB_id=580867 I6L23_RS08430 WP_004644950.1 1813037..1813759(+) (comO) [Acinetobacter lwoffii strain FDAARGOS 1393]
ATGAGTAATGAAGAATTCGATGAGTTCAGCCAGGATGTCGTCGCTGTACCCAAAAATAAAATGACTGTTGAAAAGTTTTT
TCAGCAATTCAATACATTGGATCCAAACAATTATGGTAGTTGGCCTTTATCGGTCAAAATTACCTGCTGGATTTTTATTG
CCGCGCTGGCATTTGCGGTGATTTACTTCGTTATGATCAGAAGCACGATTGAGTCAATTTCACAAGCCAGTACCCAGGAA
CAAAACCTGCTGAATGAATTCCGTGAAAAAGAATCCAAATTACGCAACTTACAACAATATCAAATCCAGCTTCAGGAAAT
GGAAGCCCGTTTTAACCAGCAGTTAGAACAGTTACCGAAAGAAACTGAGATTCCGGGTCTGGTTGAAGATATTAACCTGA
GCGGTGTGAATTCAGGCCTGAAGTTTAAAAATATTCGTCTAGAGCCTGAAATTAAACAAGAGTTCTTTATTGAACAGCCG
ATTGCAATTGAAGCGACTGGGGATTATCACGCTTTTGGCTCTTTTGTCAGCAGTATTGCCGGCTTGTCGCGTATTGTAAC
GCTGCATGATTTCACCATTACCGGTACTGAAAATAAAGAGAAAAAATCTGAAATTCCAGTCATTGATTATGTGGTAAAAG
CCAAAACTTACCGTTATGTCGGTAATGCTGAAGGTGCTGCAGCACAGCCTGAAGCTAATAGCACTACTCAGGGGGCGCAG
TAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8Q764

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

67.089

98.75

0.663
  pilO Acinetobacter baumannii D1279779

66.527

99.583

0.662