Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   I6L23_RS08425 Genome accession   NZ_CP077336
Coordinates   1812402..1813040 (+) Length   212 a.a.
NCBI ID   WP_004281141.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain FDAARGOS 1393     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1807402..1818040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L23_RS08415 (I6L23_08415) ponA 1808653..1811178 (-) 2526 WP_016806915.1 penicillin-binding protein PBP1a -
  I6L23_RS08420 (I6L23_08420) pilM 1811344..1812402 (+) 1059 WP_004644949.1 pilus assembly protein PilM Machinery gene
  I6L23_RS08425 (I6L23_08425) comN 1812402..1813040 (+) 639 WP_004281141.1 PilN domain-containing protein Machinery gene
  I6L23_RS08430 (I6L23_08430) comO 1813037..1813759 (+) 723 WP_004644950.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L23_RS08435 (I6L23_08435) pilP 1813759..1814286 (+) 528 WP_004644951.1 pilus assembly protein PilP Machinery gene
  I6L23_RS08440 (I6L23_08440) pilQ 1814305..1816458 (+) 2154 WP_004644953.1 type IV pilus secretin PilQ family protein Machinery gene
  I6L23_RS08445 (I6L23_08445) aroK 1816495..1817031 (+) 537 WP_004644955.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23911.14 Da        Isoelectric Point: 4.9286

>NTDB_id=580866 I6L23_RS08425 WP_004281141.1 1812402..1813040(+) (comN) [Acinetobacter lwoffii strain FDAARGOS 1393]
MARINLLPWRDELRIKRNNEFVAICVGALFLGLAAAGSTWFYYDHKLQDQEQANQLIQSTNQNLDVQLKALEGLQEQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSNMYITKFQRIGDKFTIEGRAESPNTVAELLRNLEASSWYRNAFMNAFLV
AEEAKEKAPSSIIPRVEESYGSFTVTVDLDQIAQPVLNEEQQAVATTTGASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=580866 I6L23_RS08425 WP_004281141.1 1812402..1813040(+) (comN) [Acinetobacter lwoffii strain FDAARGOS 1393]
ATGGCAAGAATTAACTTACTTCCTTGGCGTGATGAGCTAAGAATTAAAAGAAATAATGAATTCGTGGCAATCTGCGTGGG
GGCGCTTTTCTTGGGATTAGCAGCAGCGGGTTCAACCTGGTTTTATTATGATCACAAACTTCAGGATCAGGAGCAGGCCA
ATCAGCTGATTCAAAGTACTAACCAGAATCTGGATGTGCAGTTAAAGGCGCTTGAAGGTTTGCAAGAACAGCGTAATGCG
ATTGTTGAACGGATGAAGCTGATTCAGGGCCTACAAACCCAGCGTCCGATTGCGGTGCATTTGATTGATGAAATTGTACG
GGTGACCCCAAGCAATATGTATATCACCAAATTCCAGCGTATCGGCGATAAGTTTACCATTGAAGGTCGGGCTGAAAGTC
CAAATACGGTAGCAGAATTGCTCCGTAATCTGGAGGCATCATCTTGGTATCGGAATGCCTTTATGAACGCTTTCCTGGTG
GCTGAAGAAGCAAAAGAAAAGGCACCGAGCTCGATTATTCCACGTGTGGAAGAGTCCTATGGCAGTTTTACCGTGACGGT
AGATCTGGATCAGATCGCTCAGCCAGTACTTAACGAAGAACAACAAGCAGTCGCTACAACTACGGGGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

66.986

98.585

0.66
  pilN Acinetobacter baumannii D1279779

70.984

91.038

0.646