Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L76_RS13960 Genome accession   NZ_CP077331
Coordinates   2889122..2889652 (-) Length   176 a.a.
NCBI ID   WP_216980611.1    Uniprot ID   -
Organism   Lelliottia amnigena strain FDAARGOS 1446     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2884122..2894652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L76_RS13940 (I6L76_13940) soxS 2884589..2884915 (+) 327 WP_059179856.1 superoxide response transcriptional regulator SoxS -
  I6L76_RS13945 (I6L76_13945) - 2884912..2886498 (-) 1587 WP_202668101.1 EAL domain-containing protein -
  I6L76_RS13950 (I6L76_13950) - 2886837..2888240 (-) 1404 WP_216980610.1 sensor domain-containing diguanylate cyclase -
  I6L76_RS13955 (I6L76_13955) - 2888742..2889023 (+) 282 WP_059179853.1 YjcB family protein -
  I6L76_RS13960 (I6L76_13960) ssb 2889122..2889652 (-) 531 WP_216980611.1 single-stranded DNA-binding protein SSB1 Machinery gene
  I6L76_RS13965 (I6L76_13965) uvrA 2889898..2892720 (+) 2823 WP_059179851.1 excinuclease ABC subunit UvrA -
  I6L76_RS13970 (I6L76_13970) - 2892723..2893076 (-) 354 WP_059179850.1 MmcQ/YjbR family DNA-binding protein -
  I6L76_RS13975 (I6L76_13975) aphA 2893194..2893907 (-) 714 WP_059179849.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18819.84 Da        Isoelectric Point: 5.2456

>NTDB_id=580827 I6L76_RS13960 WP_216980611.1 2889122..2889652(-) (ssb) [Lelliottia amnigena strain FDAARGOS 1446]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKFTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGNWGQPQQPQGGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=580827 I6L76_RS13960 WP_216980611.1 2889122..2889652(-) (ssb) [Lelliottia amnigena strain FDAARGOS 1446]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGTGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCTGGTGAATATCTGCGTAAAGGTTCTCAGGTATATATC
GAAGGTCAGCTTCGTACCCGTAAATGGACCGATCAGTCCGGTGCAGAGAAGTTTACGACGGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGTGGTGGTGCTCCGGCAGGCGGCGGTCAGCAGCAGCAGGGCAACTGGG
GTCAACCTCAACAGCCACAGGGCGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCTGCACCA
GCACCGTCTAACGAACCCCCAATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.138

100

0.773
  ssb Glaesserella parasuis strain SC1401

56.522

100

0.591
  ssb Neisseria meningitidis MC58

46.667

100

0.477
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.477